The right way of fixing this in packaging is to add

permission java.lang.RuntimePermission "setContextClassLoader";

in the grant codeBase "file:${catalina.home}/bin/tomcat-juli.jar" { ...
} section of 03catalina.policy.

-- 
Tomcat security configuration error prevents proper logging when used with 
Sun's JVM
https://bugs.launchpad.net/bugs/410379
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