I though it was libmysqlclient or mysql related since it dies when
executing a query, but randomly, no specific query:

With strace:

poll([{fd=4, events=POLLIN|POLLPRI}], 1, 0) = 0 (Timeout)
write(4, "\234\1\0\0\3SELECT TABLE.FKTABLEID"..., 416) = 416
read(4, "\1\0\0\1\rK\0\0\2\3def\7testdatabase\10ITEM\10D"..., 16384) = 1096
--- SIGSEGV (Segmentation fault) @ 0 (0) ---
+++ killed by SIGSEGV +++

-- 
php5 cli segmentation fault when executing script
https://bugs.launchpad.net/bugs/586898
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