I was able to reproduce this by installing with the minimal ISO in a VM
with a separate /usr partition, then installing openssh-server, then
halting the machine.

This caused errors to be printed out because /usr had files open. The
system simply remounted /usr readonly and rebooted, which in effect
caused the fs to be clean so the fsck was normal. Still, this seems to
be improper behavior and ssh-server should be stopped when the system is
rebooting/halting.

I don't quite understand why /etc/init/ssh.conf has 'stop on runlevel
S'. Does this runlevel ever occur after normal system bootup?

-- 
sshd never stops, prevents umount of /usr partition
https://bugs.launchpad.net/bugs/603363
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