It's hard for me to reproduce this bug since it happend "automatically".
I've restored the data from a backup in the meantime and since this is
our monitoring server i can't really retry it to get the same results.

According to the dpkg.log my former version was 5.1.63-0ubuntu0.10.04.1,
i've looked into the changes between .63 and .66 bug couldn't find
anything that would explain that behaviour.

** Attachment added: "dpkg.log"
   
https://bugs.launchpad.net/ubuntu/+source/mysql-dfsg-5.1/+bug/1075484/+attachment/3425564/+files/dpkg.log

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https://bugs.launchpad.net/bugs/1075484

Title:
  upgrade of mysql-server-5.1 to 5.1.66-0ubuntu0.10.04.1 removed InnoDB
  datafiles

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