Thanks for taking the time to report this bug.

I can see how /var/lib/tomcat7/* could leak into instances created using
tomcat7-instance-create; Marking 'Low' and 'Triaged'

** Changed in: tomcat6 (Ubuntu)
       Status: New => Triaged

** Changed in: tomcat7 (Ubuntu)
       Status: New => Triaged

** Changed in: tomcat7 (Ubuntu)
   Importance: Undecided => Medium

** Changed in: tomcat7 (Ubuntu)
   Importance: Medium => Low

** Changed in: tomcat6 (Ubuntu)
   Importance: Undecided => Low

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https://bugs.launchpad.net/bugs/1068405

Title:
  catalina.properties use hard references to /var/lib/tomcat7/

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