Thanks Chris but that piece of configuration does not exists.
I tried to switch gl_conf (pointing either to mesa or nvidia-current) but it 
did not work either.
The only thing that worked is letting /usr/lib/nvidia-current/libGL.so.1 
symbolic link to point to /usr/lib/mesa/libGL.so.1
However I think that this is a job for ironhide. This is another confirmation 
that this is not a mesa bug.

Thanks again

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which is subscribed to mesa in Ubuntu.
https://bugs.launchpad.net/bugs/781353

Title:
  libgl1-mesa-dri: display inverted (upside-down) in startkde after
  natty upgrade

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