Public bug reported:

I am not sure that it's not a jokey problem, please reassign it there if it is.
I was investigating smearing of the screen on oneiric beta, and enabled fglrx 
via jokey. It did not affect the problem (must be a compiz problem I suppose), 
and I disabled fglrx back via jokey. After that, programs that depend on libGL 
could not start anymore (compiz, unity, ...). I found that there is a number of 
links in /etc/alternatives, including the libGL one, that point to 
/usr/lib/fglrx/... while the files are not there. Apparently, the "disable" 
operation removed the package but did not restore the library alternatives. 
Enabling the driver again brought the system to life.

** Affects: fglrx-installer (Ubuntu)
     Importance: Undecided
         Status: New

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which is subscribed to fglrx-installer in Ubuntu.
https://bugs.launchpad.net/bugs/864114

Title:
  disabling fglrx from jokey leaves broken alternatives

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