I confirm that the bug is still present in Ubuntu 12.04 LTS.
I further confirm that I can work around it with:
ln -s .xmodmaprc .Xmodmap
** Changed in: x11-xserver-utils (Ubuntu)
Status: Expired => Confirmed
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https://bugs.launchpad.net/bugs/857615
Title:
~/.xmodmaprc is not used
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