jenskapitza, thank you for your comments. Regarding 
https://bugs.launchpad.net/ubuntu/+source/xorg-server/+bug/1172221/comments/31 
::
>"i can't reproduce the xorg server crash at the moment i'll check another 
>application (longer test) if the crah will happen again. more results 
>hopefully at the weekend"

Ok. We'll just hold off on this report until you have stress tested your
setup.

>"should i open a new bug for the compiz stuff? i don't know if it is
compiz (checking with fluxbox without compiz) results in the same
problem the mouse does not work in this window. (it is more an
transparency problem) but who handle this? is this an gtk issue or
opengl? or any hints where i can look at to clear which component is
affected"

I would open a new report via a terminal:
ubuntu-bug xorg

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https://bugs.launchpad.net/bugs/1172221

Title:
  8086:0166 JavaFX not working since 12.10

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