What about just getting rid of the:
/usr/lib/x86_64-linux-gnu/libGL.so symlink?   It's provided by libgl1-mesa-dev. 
 I have the nvidia driver installed and it libGL.so (above) is still symlinked 
to mesa.

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https://bugs.launchpad.net/bugs/1609110

Title:
  Do we still need the mesa or mesa-egl directories in /usr/lib/<arch>?

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