While searching the net again about this problem I came across this
post: http://ohioloco.ubuntuforums.org/showthread.php?p=8337536

Apparently the problem is a incompatibility with compiz. After I tried
"metacity --replace&" at the command line, blender is working fine, no
screen corruption. Rendering is working too.

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[R400 X700] Blender incorrect repainting and screen corruption
https://bugs.launchpad.net/bugs/426319
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