It was app-specific in my case. For example, kvm/qemu was configured to
use something other than pulseaudio, and was fighting with pulseaudio,
causing the video output to be jerky as it used 100% cpu trying to play
sound. Once I reconfigured the errant apps to talk to pulseaudio instead
of whatever they were trying to talk to, things were smooth.

In all fairness, the problem wasn't even pulseaudio itself, but rather
misconfigured apps. But I never had problems before pulseaudio, and
there was recently a Slashdot article bashing pulseaudio, so that's
where the blame went...

I never did get the Phoronix test running; it bombed out with some kind
of gtk error. But I convinced myself that it wasn't the Intel driver at
fault by comparing extremetuxracer framerates. It was significantly
faster in 9.10 -- double the framerate at 800x600 (60fps vs 30fps), and
about 20% faster at 1680x1050 (30fps vs 25fps).

If you want a test that doesn't depend on sound or require installing
extra software, look at your screensaver demos. They don't interface
with the soundcard at all -- just 2D and 3D graphics. If the
screensavers look like they are running at the same speed under both
your systems, then it's probably not the video driver at fault. That
should have been my tip-off to look elsewhere, but I ignored this data
point and still blamed the video driver.

One other thing that may or may not apply in your case: While trying to
solve this problem, I read about some people who had trouble if they had
an Intel and Radeon card in the same system (Intel on motherboard and
Radeon card). If they installed the radeon proprietary driver, then I
think the Intel card would get slow or broken. It didn't apply to me
though, so I didn't read it too closely.

-- 
Intel x3100 enormous regression in ubuntu 9.10 beta
https://bugs.launchpad.net/bugs/451523
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