Public bug reported:

$ sudo /etc/init.d/dkms_autoinstaller start
 * Running DKMS auto installation service for kernel 2.6.31.6-rt19-dx73-d
 *  nvidia (96.43.13)...                                                 [fail]
$ cat /var/lib/dkms/nvidia/96.43.13/build/make.log 
DKMS make.log for nvidia-96.43.13 for kernel 2.6.31.6-rt19-dx73-d (i686)
Сбт Янв  2 16:49:21 EET 2010
If you are using a Linux 2.4 kernel, please make sure
you either have configured kernel sources matching your
kernel or the correct set of kernel headers installed
on your system.

If you are using a Linux 2.6 kernel, please make sure
you have configured kernel sources matching your kernel
installed on your system. If you specified a separate
output directory using either the "KBUILD_OUTPUT" or
the "O" KBUILD parameter, make sure to specify this
directory with the SYSOUT environment variable or with
the equivalent nvidia-installer command line option.

Depending on where and how the kernel sources (or the
kernel headers) were installed, you may need to specify
their location with the SYSSRC environment variable or
the equivalent nvidia-installer command line option.

*** Unable to determine the target kernel version. ***

make: *** [select_makefile] Ошибка 1
$ cat /var/lib/dkms/nvidia/96.43.13/source/dkms.conf
PACKAGE_NAME="nvidia"
PACKAGE_VERSION="96.43.13"
CLEAN="make clean"
BUILT_MODULE_NAME[0]="nvidia"
MAKE[0]="make module KERNDIR=/lib/modules/$kernelver IGNORE_XEN_PRESENCE=1 
IGNORE_CC_MISMATCH=1 SYSSRC=$kernel_source_dir"
DEST_MODULE_LOCATION[0]="/kernel/drivers/video/nvidia"
PATCH[0]="fall_back_on_mtrr_if_no_pat.patch"
PATCH_MATCH[0]="2.6.31"
PATCH[1]="nvidia-rt-compat-legacy.patch"
PATCH_MATCH[1]="2.6.31"
PATCH[2]="rt_preempt_31.patch"
PATCH_MATCH[2]="2.6.31"
AUTOINSTALL="yes"

Custom build in /usr/src/nvidia-96.43.13 works done.

ProblemType: Bug
Architecture: i386
Date: Sat Jan  2 16:44:10 2010
DistroRelease: Ubuntu 9.10
Lsusb:
 Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
 Bus 002 Device 001: ID 1d6b:0001 Linux Foundation 1.1 root hub
 Bus 004 Device 002: ID 0a81:0101 Chesen Electronics Corp. Keyboard
 Bus 004 Device 001: ID 1d6b:0001 Linux Foundation 1.1 root hub
 Bus 003 Device 001: ID 1d6b:0001 Linux Foundation 1.1 root hub
NonfreeKernelModules: nvidia
Package: nvidia-96-kernel-source 96.43.13-0ubuntu6 [modified: 
usr/src/nvidia-96.43.13/dkms.conf]
ProcCmdLine: BOOT_IMAGE=/vmlinuz-2.6.31.6-rt19-hostname-d root=/dev/sda5 ro 
hpet=force rootflags=data=journal video=uvesafb:1600x1...@60,mtrr,ywrap
ProcEnviron:
 LANG=ru_RU.UTF-8
 SHELL=/bin/bash
ProcVersionSignature: Ubuntu 2.6.31
RelatedPackageVersions:
 xserver-xorg 1:7.4+3ubuntu10
 libgl1-mesa-glx 7.6.0-1ubuntu4
 libdrm2 2.4.14-1ubuntu1
 xserver-xorg-video-intel N/A
 xserver-xorg-video-ati N/A
SourcePackage: nvidia-graphics-drivers-96
Uname: Linux 2.6.31.6-rt19-dx73-d i686
fglrx: Not loaded
system:
 distro:             Ubuntu
 architecture:       i686kernel:             2.6.31.6-rt19-dx73-d

** Affects: nvidia-graphics-drivers-96 (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: apport-bug i386

-- 
DKMS couldn't make module for custom kernel
https://bugs.launchpad.net/bugs/502334
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