You mean that there is a delay and so some events gets lost(that are in
300 to 400ms time interval) after you stop scrolling and start again...
right!!

Strange bug!! 
I hope that you laptop is not pretty old before starting out. That because of 
low configuration it is not able to pic up fast enough cursor movements. Please 
ensure that. Besides I will like to know you laptop model and possibly you 
touchpad model also.

Also confirm the bug yourself by running 
$xev

and confirming that the events there gets stuck after you leave off you
finger from the touchpad. Upload the log to launchpad in an attachment.

For any help regarding debugging yourself .. see 
https://wiki.ubuntu.com/DebuggingTouchpadDetection
and ask if you need any help regarding that.

 I think we can nail where the bug exactly is.  Your proper feedback
will really matter here..

-- 
Touchpad gets stuck and is generally unresponsive
https://bugs.launchpad.net/bugs/372090
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which is subscribed to xserver-xorg-input-synaptics in ubuntu.

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