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https://issues.apache.org/jira/browse/UIMA-459?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#action_12506420
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Thilo Goetz commented on UIMA-459:
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I investigated some more, trying various combinations.  First of all, I can 
only reproduce this when building from Eclipse.  On the command line, 
everything works fine.  I thought yesterday that I had seen this on the command 
line as well, but I can no longer reproduce this.  From Eclipse though, it's 
reliable (for me).  Secondly, the JVM doesn't matter, neither on the command 
line, nor in Eclipse.  I tried various v. 5 and 6 JVMs, from Sun and IBM.  All 
show the same behavior.

So my setup is: Eclipse 3.2.1, Windows XP, Java 5 or 6.

Here's what I do to reproduce: make sure uima-docbook-tool is up to date.  
Delete uima-docbooks project, do clean checkout from svn.  Add docbook 
build.xml to ant view, build.  Everything works fine!  Now you can do either of 
the following: manually delete the target folder, or do an ant clean.  Then 
build the whole thing again.  references.html has 0 bytes for me.  Is 
references.html the last file to be generated?  Maybe that has something to do 
with it.

I'm attaching the output of ant -v in case anything jumps out at you.  However, 
since this all works from the command line, I'm really not sure this is worth 
spending any time on.  Could be just some kind of weirdness in my Eclipse 
setup, or some form of user error.  If nothing strikes you as odd from the ant 
output, I'm fine with just closing this issue (especially since I have a 
perfectly good workaround even inside Eclipse).

> References html file has 0 bytes after clean build
> --------------------------------------------------
>
>                 Key: UIMA-459
>                 URL: https://issues.apache.org/jira/browse/UIMA-459
>             Project: UIMA
>          Issue Type: Bug
>          Components: Documentation
>    Affects Versions: 2.2
>            Reporter: Thilo Goetz
>            Assignee: Marshall Schor
>             Fix For: 2.2
>
>
> When built separately, the references html file is generated correctly.  When 
> the whole docbook build is run, for example in a clean extract, the 
> references.html is empty (while the pdf is generated correctly).

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