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https://issues.apache.org/jira/browse/UIMA-1468?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12737480#action_12737480
]
Jörn Kottmann commented on UIMA-1468:
-------------------------------------
The problem which caused the IllegalArgumentException was fixed in UIMA-1470.
Please test if saving now is reliable in the Cas Editor.
There are more exceptions in the log file you provided right now I am
investigating
this one:
java.lang.NumberFormatException: For input string: "0x00FF0000"
at java.lang.NumberFormatException.forInputString(Unknown Source)
at java.lang.Integer.parseInt(Unknown Source)
at java.lang.Integer.parseInt(Unknown Source)
at
org.apache.uima.caseditor.core.model.dotcorpus.DotCorpusSerializer.parseDotCorpus(DotCorpusSerializer.java:150)
at
org.apache.uima.caseditor.core.model.DotCorpusElement.createDotCorpus(DotCorpusElement.java:348)
at
org.apache.uima.caseditor.core.model.NlpProject.loadDotCorpus(NlpProject.java:197)
at
org.apache.uima.caseditor.core.model.NlpProject.initialize(NlpProject.java:92)
at
org.apache.uima.caseditor.core.model.NlpModel.createNlpProject(NlpModel.java:460)
at
org.apache.uima.caseditor.core.model.NlpModel.createNlpProjects(NlpModel.java:471)
at
org.apache.uima.caseditor.core.model.NlpModel.<init>(NlpModel.java:366)
at
org.apache.uima.caseditor.CasEditorPlugin.getNlpModel(CasEditorPlugin.java:160)
at
org.apache.uima.caseditor.editor.DefaultCasDocumentProvider.createDocument(DefaultCasDocumentProvider.java:25)
at
org.eclipse.ui.texteditor.AbstractDocumentProvider.createElementInfo(AbstractDocumentProvider.java:331)
at
org.eclipse.ui.texteditor.AbstractDocumentProvider.connect(AbstractDocumentProvider.java:398)
at
org.eclipse.ui.texteditor.AbstractTextEditor.doSetInput(AbstractTextEditor.java:4134)
at
org.eclipse.ui.texteditor.StatusTextEditor.doSetInput(StatusTextEditor.java:203)
at
org.apache.uima.caseditor.editor.AnnotationEditor.doSetInput(AnnotationEditor.java:694)
at
org.eclipse.ui.texteditor.AbstractTextEditor$19.run(AbstractTextEditor.java:3115)
at
org.eclipse.jface.operation.ModalContext.runInCurrentThread(ModalContext.java:464)
at org.eclipse.jface.operation.ModalContext.run(ModalContext.java:372)
at
org.eclipse.jface.window.ApplicationWindow$1.run(ApplicationWindow.java:759)
at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:70)
at
org.eclipse.jface.window.ApplicationWindow.run(ApplicationWindow.java:756)
at
org.eclipse.ui.internal.WorkbenchWindow.run(WorkbenchWindow.java:2578)
at
org.eclipse.ui.texteditor.AbstractTextEditor.internalInit(AbstractTextEditor.java:3133)
at
org.eclipse.ui.texteditor.AbstractTextEditor.init(AbstractTextEditor.java:3160)
at
org.eclipse.ui.internal.EditorManager.createSite(EditorManager.java:798)
at
org.eclipse.ui.internal.EditorReference.createPartHelper(EditorReference.java:644)
at
org.eclipse.ui.internal.EditorReference.createPart(EditorReference.java:462)
at
org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:595)
at org.eclipse.ui.internal.PartPane.setVisible(PartPane.java:313)
at
org.eclipse.ui.internal.presentations.PresentablePart.setVisible(PresentablePart.java:180)
at
org.eclipse.ui.internal.presentations.util.PresentablePartFolder.select(PresentablePartFolder.java:270)
at
org.eclipse.ui.internal.presentations.util.LeftToRightTabOrder.select(LeftToRightTabOrder.java:65)
at
org.eclipse.ui.internal.presentations.util.TabbedStackPresentation.selectPart(TabbedStackPresentation.java:473)
at
org.eclipse.ui.internal.PartStack.refreshPresentationSelection(PartStack.java:1256)
at org.eclipse.ui.internal.PartStack.setSelection(PartStack.java:1209)
at org.eclipse.ui.internal.PartStack.showPart(PartStack.java:1608)
at org.eclipse.ui.internal.PartStack.add(PartStack.java:499)
at org.eclipse.ui.internal.EditorStack.add(EditorStack.java:103)
at org.eclipse.ui.internal.PartStack.add(PartStack.java:485)
at org.eclipse.ui.internal.EditorStack.add(EditorStack.java:112)
at
org.eclipse.ui.internal.EditorSashContainer.addEditor(EditorSashContainer.java:63)
at
org.eclipse.ui.internal.EditorAreaHelper.addToLayout(EditorAreaHelper.java:225)
at
org.eclipse.ui.internal.EditorAreaHelper.addEditor(EditorAreaHelper.java:213)
at
org.eclipse.ui.internal.EditorManager.createEditorTab(EditorManager.java:778)
at
org.eclipse.ui.internal.EditorManager.openEditorFromDescriptor(EditorManager.java:677)
at
org.eclipse.ui.internal.EditorManager.openEditor(EditorManager.java:638)
at
org.eclipse.ui.internal.WorkbenchPage.busyOpenEditorBatched(WorkbenchPage.java:2854)
at
org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:2762)
at
org.eclipse.ui.internal.WorkbenchPage.access$11(WorkbenchPage.java:2754)
at org.eclipse.ui.internal.WorkbenchPage$10.run(WorkbenchPage.java:2705)
at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:70)
at
org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2701)
at
org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2685)
at
org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2676)
at org.eclipse.ui.ide.IDE.openEditor(IDE.java:651)
at org.eclipse.ui.ide.IDE.openEditor(IDE.java:610)
at
org.eclipse.jdt.internal.ui.javaeditor.EditorUtility.openInEditor(EditorUtility.java:361)
at
org.eclipse.jdt.internal.ui.javaeditor.EditorUtility.openInEditor(EditorUtility.java:168)
at org.eclipse.jdt.ui.actions.OpenAction.run(OpenAction.java:229)
at org.eclipse.jdt.ui.actions.OpenAction.run(OpenAction.java:208)
at
org.eclipse.jdt.ui.actions.SelectionDispatchAction.dispatchRun(SelectionDispatchAction.java:274)
at
org.eclipse.jdt.ui.actions.SelectionDispatchAction.run(SelectionDispatchAction.java:250)
at
org.eclipse.jdt.internal.ui.navigator.OpenAndExpand.run(OpenAndExpand.java:49)
at org.eclipse.ui.actions.RetargetAction.run(RetargetAction.java:221)
at
org.eclipse.ui.navigator.CommonNavigatorManager$3.open(CommonNavigatorManager.java:202)
at
org.eclipse.ui.OpenAndLinkWithEditorHelper$InternalListener.open(OpenAndLinkWithEditorHelper.java:48)
at
org.eclipse.jface.viewers.StructuredViewer$2.run(StructuredViewer.java:842)
at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
at org.eclipse.core.runtime.Platform.run(Platform.java:888)
at org.eclipse.ui.internal.JFaceUtil$1.run(JFaceUtil.java:48)
at org.eclipse.jface.util.SafeRunnable.run(SafeRunnable.java:175)
at
org.eclipse.jface.viewers.StructuredViewer.fireOpen(StructuredViewer.java:840)
at
org.eclipse.jface.viewers.StructuredViewer.handleOpen(StructuredViewer.java:1101)
at
org.eclipse.ui.navigator.CommonViewer.handleOpen(CommonViewer.java:467)
at
org.eclipse.jface.viewers.StructuredViewer$6.handleOpen(StructuredViewer.java:1205)
at
org.eclipse.jface.util.OpenStrategy.fireOpenEvent(OpenStrategy.java:264)
at org.eclipse.jface.util.OpenStrategy.access$2(OpenStrategy.java:258)
at
org.eclipse.jface.util.OpenStrategy$1.handleEvent(OpenStrategy.java:298)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1003)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3880)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3473)
at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:2405)
at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2369)
at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2221)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:500)
at
org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
at
org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:493)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149)
at
org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:113)
at
org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:194)
at
org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at
org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at
org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:368)
at
org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:559)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:514)
at org.eclipse.equinox.launcher.Main.run(Main.java:1311)
Did you change the .corpus file in the project folder manually ? If not it
would be nice if you can attach it to this issue.
Jörn
> Saving of annotations and relations does not always work properly
> -----------------------------------------------------------------
>
> Key: UIMA-1468
> URL: https://issues.apache.org/jira/browse/UIMA-1468
> Project: UIMA
> Issue Type: Bug
> Components: CasEditor
> Affects Versions: 2.2.2
> Reporter: Peter Prettenhofer
> Attachments: caseditor.log
>
>
> We have encountered a problem concerning saving manually annotated documents
> with the Apache UIMA CasEditor.
> In short, not all annotations and relations are always saved when saving an
> xmi file. That is, oftentimes we save an annotated document and reopen it
> with the annotation editor, some of the annotations and all relations are
> missing.
> We are not quite sure what the underlying problem is and we even didn't
> manage to always reproduce it, but this is what we've done and observed:
> After importing a text file (.txt) and opening its corresponding xmi file
> with the annotation editor we annotated some entities and created relations
> among them afterwards. We then saved and closed that file. Reopening it
> again, in most cases the first couple of annotations still existed. However,
> subsequent annotations and, especially, all relations were missing.
> An interesting observation that might help to find the actual problem is the
> following: When we annotated and saved the same previously edited document
> again, everything worked fine, i.e. all annotations and relations had
> actually been saved.
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