The deploytool (used to deploy soap annotators) formerly had a classpath which started with %CATALINA_HOME%\webapps\axis\WEB-INF\classes. After the refactoring to use a common script, this path entry will now follow %UIMA_CLASSPATH%, and core UIMA, and ActiveMQ (if %ACTIVEMQ_HOME% is set), and %CATALINA_HOME%\webapps\axis\WEB-INF\lib.
Is this OK? -Marshall