I've installed and configured a single node instance of atlas. It ran the
quickstart.sh set up and I can see all the meta data. I can also do basic
CRUD operations through the API.
When I try to import a single table hive example using the import-hive.sh
script, I run into an error on the Berkeley DB storage backend.
I'm going to reset to the installation branch and try the local hbase+solr
installation to get around this roadblock. Later I'll try and do a more in
depth investigation into causes. Apologies for the crappy formatting.
Daniel Lee
2017-10-03 14:40:53,229 ERROR - [pool-1-thread-8 -
f6cec1a7-1f19-4aea-811b-b02b646f5bc0:] ~ Unable to update entity by GUID
71460f15-4c8b-4f8d-9377-e40ed4d810f1
{"jsonClass":"org.apache.atlas.typesystem.json.InstanceSerialization$_Reference","id":{"jsonClass":"org.apache.atlas.typesystem.json.InstanceSerialization$_Id","id":"71460f15-4c8b-4f8d-9377-e40ed4d810f1","version":0,"typeName":"hive_db","state":"ACTIVE"},"typeName":"hive_db","values":{"name":"default","location":"hdfs://localhost:9000/user/hive/warehouse","description":"Default
Hive database","ownerType":2,"qualifiedName":"default@primary
","owner":"public","clusterName":"primary","parameters":{}},"traitNames":[],"traits":{},"systemAttributes":{"createdBy":"admin","modifiedBy":"admin","createdTime":"2017-10-03T21:26:44.312Z","modifiedTime":"2017-10-03T21:26:44.312Z"}}
(EntityResource:509)
com.thinkaurelius.titan.core.TitanException: Could not commit transaction
due to exception during persistence
at
com.thinkaurelius.titan.graphdb.transaction.StandardTitanTx.commit(StandardTitanTx.java:1348)
....
Caused by: com.thinkaurelius.titan.core.TitanException: Could not execute
operation due to backend exception
at
com.thinkaurelius.titan.diskstorage.util.BackendOperation.execute(BackendOperation.java:44)
at
com.thinkaurelius.titan.diskstorage.keycolumnvalue.cache.CacheTransaction.persist(CacheTransaction.java:86)
at
com.thinkaurelius.titan.diskstorage.keycolumnvalue.cache.CacheTransaction.flushInternal(CacheTransaction.java:140)
....
Caused by: com.thinkaurelius.titan.diskstorage.PermanentBackendException:
Permanent failure in storage backend
at
com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEKeyValueStore.insert(BerkeleyJEKeyValueStore.java:206)
at
com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEKeyValueStore.insert(BerkeleyJEKeyValueStore.java:183)
at
com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.mutateMany(BerkeleyJEStoreManager.java:193)
at
com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.mutateMany(OrderedKeyValueStoreManagerAdapter.java:100)
....
Caused by: com.sleepycat.je.LockTimeoutException: (JE 5.0.73) Lock expired.
Locker 1070091868 32844_pool-1-thread-8 -
f6cec1a7-1f19-4aea-811b-b02b646f5bc0_Txn: waited for lock on
database=edgestore LockAddr:1375011805 LSN=0x0/0xe6ff0 type=WRITE
grant=WAIT_PROMOTION timeoutMillis=500 startTime=1507066852720
endTime=1507066853224
Owners: [<LockInfo locker="1070091868 32844_pool-1-thread-8 -
f6cec1a7-1f19-4aea-811b-b02b646f5bc0_Txn" type="READ"/>, <LockInfo
locker="1701677508 32843_pool-1-thread-6_Txn" type="READ"/>]
Waiters: []
Transaction 1070091868 32844_pool-1-thread-8 -
f6cec1a7-1f19-4aea-811b-b02b646f5bc0_Txn owns LockAddr:1375011805 <LockInfo
locker="1070091868 32844_pool-1-thread-8 -
f6cec1a7-1f19-4aea-811b-b02b646f5bc0_Txn" type="READ"/>
Transaction 1070091868 32844_pool-1-thread-8 -
f6cec1a7-1f19-4aea-811b-b02b646f5bc0_Txn waits for LockAddr:1375011805
at
com.sleepycat.je.txn.LockManager.newLockTimeoutException(LockManager.java:664)
at
com.sleepycat.je.txn.LockManager.makeTimeoutMsgInternal(LockManager.java:623)
at
com.sleepycat.je.txn.SyncedLockManager.makeTimeoutMsg(SyncedLockManager.java:97)
at com.sleepycat.je.txn.LockManager.lockInternal(LockManager.java:390)
at com.sleepycat.je.txn.LockManager.lock(LockManager.java:276)
at com.sleepycat.je.txn.Txn.lockInternal(Txn.java:498)
at com.sleepycat.je.txn.Locker.lock(Locker.java:443)
at com.sleepycat.je.dbi.CursorImpl.lockLN(CursorImpl.java:2621)
at com.sleepycat.je.dbi.CursorImpl.getSlotReuseInfo(CursorImpl.java:1091)
at com.sleepycat.je.dbi.CursorImpl.putInternal(CursorImpl.java:880)
at com.sleepycat.je.dbi.CursorImpl.put(CursorImpl.java:811)
at com.sleepycat.je.Cursor.putAllowPhantoms(Cursor.java:2243)
at com.sleepycat.je.Cursor.putNoNotify(Cursor.java:2200)
at com.sleepycat.je.Cursor.putNotify(Cursor.java:2117)
at com.sleepycat.je.Cursor.putNoDups(Cursor.java:2052)
at com.sleepycat.je.Cursor.putInternal(Cursor.java:2020)
at com.sleepycat.je.Database.putInternal(Database.java:1302)
at com.sleepycat.je.Database.put(Database.java:1172)
at
com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEKeyValueStore.insert(BerkeleyJEKeyValueStore.java:194)
... 105 more
