We are running apache-cassandra-2.2.6 for months with no JNA startup issues.
Recently, we have updated some of our cassandra machines and we ran into a
Cassandra startup issue with JNA. See the stack trace 1 below.
Question 1: Our Cassandra package contains jna-4.0.0.jar in the
/usr/share/cassandra/lib/ directory. Does apache-cassandra-2.2.6 specifically
package A-C* with the jna-4.0.0.jar ?
I tried to circumvent the exception by yum installing jna-3.2.4.jar for RHEL
6.4 and adding it to the /usr/share/cassandra/lib/ directory. This got me past
the JNA mlockall failure with "INFO 16:56:47 JNA mlockall successful" but when
the MemtableFlushWriter requested memory allocation, I now get the STACK TRACE
2 error. "nodetool status" still reports the node as incomplete.
Any Suggestions?
Thank you
STACK TRACE 1:
ERROR [MemtableFlushWriter:1] 2017-07-17 22:33:13,376 CassandraDaemon.java:185
- Exception in thread Thread[MemtableFlushWriter:1,5,main]
java.lang.NoClassDefFoundError: Could not initialize class com.sun.jna.Native
at
org.apache.cassandra.utils.memory.MemoryUtil.allocate(MemoryUtil.java:82)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at org.apache.cassandra.io.util.Memory.<init>(Memory.java:74)
~[apache-cassandra-clientutil-2.2.6-E002.jar:2.2.6-E002]
at org.apache.cassandra.io.util.SafeMemory.<init>(SafeMemory.java:32)
~[apache-cassandra-clientutil-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.compress.CompressionMetadata$Writer.<init>(CompressionMetadata.java:304)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.compress.CompressionMetadata$Writer.open(CompressionMetadata.java:318)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.compress.CompressedSequentialWriter.<init>(CompressedSequentialWriter.java:73)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.util.SequentialWriter.open(SequentialWriter.java:168)
~[apache-cassandra-clientutil-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.sstable.format.big.BigTableWriter.<init>(BigTableWriter.java:75)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.sstable.format.big.BigFormat$WriterFactory.open(BigFormat.java:107)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.sstable.format.SSTableWriter.create(SSTableWriter.java:84)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.db.Memtable$FlushRunnable.createFlushWriter(Memtable.java:433)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.db.Memtable$FlushRunnable.writeSortedContents(Memtable.java:376)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.db.Memtable$FlushRunnable.runMayThrow(Memtable.java:361)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.utils.WrappedRunnable.run(WrappedRunnable.java:28)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
com.google.common.util.concurrent.MoreExecutors$SameThreadExecutorService.execute(MoreExecutors.java:297)
~[guava-16.0.jar:na]
at
org.apache.cassandra.db.ColumnFamilyStore$Flush.run(ColumnFamilyStore.java:1146)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
~[na:1.7.0_141]
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
~[na:1.7.0_141]
at java.lang.Thread.run(Thread.java:745) ~[na:1.7.0_141]
STACK TRACE 2:
ERROR 16:56:51 Exception in thread Thread[MemtableFlushWriter:1,5,main]
java.lang.NoSuchMethodError: com.sun.jna.Native.malloc(J)J
at
org.apache.cassandra.utils.memory.MemoryUtil.allocate(MemoryUtil.java:82)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at org.apache.cassandra.io.util.Memory.<init>(Memory.java:74)
~[apache-cassandra-clientutil-2.2.6-E002.jar:2.2.6-E002]
at org.apache.cassandra.io.util.SafeMemory.<init>(SafeMemory.java:32)
~[apache-cassandra-clientutil-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.compress.CompressionMetadata$Writer.<init>(CompressionMetadata.java:304)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.compress.CompressionMetadata$Writer.open(CompressionMetadata.java:318)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.compress.CompressedSequentialWriter.<init>(CompressedSequentialWriter.java:73)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.util.SequentialWriter.open(SequentialWriter.java:168)
~[apache-cassandra-clientutil-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.sstable.format.big.BigTableWriter.<init>(BigTableWriter.java:75)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.sstable.format.big.BigFormat$WriterFactory.open(BigFormat.java:107)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.io.sstable.format.SSTableWriter.create(SSTableWriter.java:84)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.db.Memtable$FlushRunnable.createFlushWriter(Memtable.java:433)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.db.Memtable$FlushRunnable.writeSortedContents(Memtable.java:376)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.db.Memtable$FlushRunnable.runMayThrow(Memtable.java:361)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
org.apache.cassandra.utils.WrappedRunnable.run(WrappedRunnable.java:28)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
com.google.common.util.concurrent.MoreExecutors$SameThreadExecutorService.execute(MoreExecutors.java:297)
~[guava-16.0.jar:na]
at
org.apache.cassandra.db.ColumnFamilyStore$Flush.run(ColumnFamilyStore.java:1146)
~[apache-cassandra-2.2.6-E002.jar:2.2.6-E002]
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
~[na:1.7.0_141]
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
~[na:1.7.0_141]
at java.lang.Thread.run(Thread.java:745) ~[na:1.7.0_141]
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