I believe your problem is the same as I encountered a few months back.
The thread is available here:

http://www.mail-archive.com/[email protected]/msg02224.html

On 1/18/09, [email protected] <[email protected]> wrote:
> Env:
>    commons-email:  ver 1.1
>    mail.jar: ver 1.1
>    JDK: 1.6
>    RedHat 4
>
> I am composing and dispatching a SimpleEmail from workstation
> ws.xxx.com (RedHat4) to [email protected] as shown below.
>
> I have enabled debugs. And I find that the mail is received without the
> Subject line.
>
>               SimpleEmail message = new SimpleEmail();
>               message.setDebug(true);
>
>               // Set header details
>               message.setFrom(getFrom());
>               message.addTo(getTo());
>               message.setSubject("test");
>               final String text= ... ( some text ) ... ;
>               message.setMsg(text);
>               //...
>                message.setHostName(mailserver);
>               try {
>                               message.send();
>               } catch (EmailException e) { }
>                               
> The mail is received without the Subject header.
> The debug traces are shown below.
>
> I am at my wit's end on why this is happening.
> Please help!
>
> Regards
>
> /Um
>
> Debugs:
> Loading javamail.default.providers from
> jar:file:/usr/lib/mail-1.0.jar!/META-INF/javamail.default.providers
> DEBUG: loading new provider protocol=imap,
> className=com.sun.mail.imap.IMAPStore, vendor=Sun Microsystems, Inc,
> version=null
> DEBUG: loading new provider protocol=smtp,
> className=com.sun.mail.smtp.SMTPTransport, vendor=Sun Microsystems, Inc,
> version=null
> DEBUG: loading new provider protocol=pop3,
> className=com.sun.mail.pop3.POP3Store, vendor=Sun Microsystems, Inc,
> version=null
> DEBUG: getProvider() returning provider protocol=smtp;
> type=javax.mail.provider$t...@120f96a;
> class=com.sun.mail.smtp.SMTPTransport; vendor=Sun Microsystems, Inc
> DEBUG SMTP: useEhlo true, useAuth false
> DEBUG SMTP: trying to connect to host "mailserver.xxx.com", port 25
>
> 220 mailserver.xxx.com ESMTP Sendmail 8.13.8/8.13.8; Sun, 18 Jan 2009
> 18:13:47 GMT
> DEBUG SMTP: connected to host "mailserver.xxx.com", port: 25
>
> EHLO ws.xxx.com
> 250-mailserver.xxx.com Hello ws.xxx.com [10.194.53.15], pleased to meet you
> 250-ENHANCEDSTATUSCODES
> 250-PIPELINING
> 250-EXPN
> 250-VERB
> 250-8BITMIME
> 250-SIZE 32000000
> 250-DSN
> 250-ETRN
> 250-DELIVERBY
> 250 HELP
> DEBUG SMTP: Found extension "ENHANCEDSTATUSCODES", arg ""
> DEBUG SMTP: Found extension "PIPELINING", arg ""
> DEBUG SMTP: Found extension "EXPN", arg ""
> DEBUG SMTP: Found extension "VERB", arg ""
> DEBUG SMTP: Found extension "8BITMIME", arg ""
> DEBUG SMTP: Found extension "SIZE", arg "32000000"
> DEBUG SMTP: Found extension "DSN", arg ""
> DEBUG SMTP: Found extension "ETRN", arg ""
> DEBUG SMTP: Found extension "DELIVERBY", arg ""
> DEBUG SMTP: Found extension "HELP", arg ""
> DEBUG SMTP: use8bit false
> MAIL FROM:<[email protected]>
> 250 2.1.0 <[email protected]>... Sender ok
> RCPT TO:<[email protected]>
> 250 2.1.5 <[email protected]>... Recipient ok
> DEBUG SMTP: Verified Addresses
> DEBUG SMTP:   "[email protected]" <[email protected]>
> DATA
> 354 Enter mail, end with "." on a line by itself
>
>
> This is a test email.
>
> .
> 250 2.0.0 n0IIDlCb025075 Message accepted for delivery
> QUIT
>
>
>
>
>
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