Hi Tim,
I remember you, you helped me out a while back! I can't tell you how much
that BagOfAnnotations.java file has been a Godsend! Thanks again for posting
it last month.
As for historyOf feature, I don't so much mind performance so if you have
something that works for the historyOf with just only a performance issue, I'll
still take it. I do appreciate your prompt response on the historyOf feature
which saved me from stepping through the code which I've done a few
times....the time spent stepping through is equivalent to watching a feature
film and there's a lot going on in the code that I don't understand yet.
As for sementID's with the rule-based sectionizer/segmenter, I'd like to help
out with testing. It appears that the first step is manual configuration
per your email. Pei, when you have a moment I'd like to start with
explanation of how it works then we can move forward from there.
Thanks.
Regards,
Paula
Date: Tue, 26 Nov 2013 09:24:20 -0500
From: [email protected]
To: [email protected]
Subject: Re: Question pertaining to HistoryOf and SegmentID features
Hi Paula,
The historyOf module is currently under development, that explains
those files you're seeing. As of right now we are not satisfied
enough with the performance to release it publicly. It is marked 0
because it is defined as an integer field I believe, so it can't be
assigned null.
As for the segment IDs in your other question, the default segmenter
just makes the whole document one segment because we don't yet have
a module robust enough to run on notes from any institution. We have
been hoping to get one developed but nothing has materialized so
far. There is a rule-based sectionizer/segmenter in the cTAKES
distribution but it requires some manual configuration and is not
very widely tested. If you are interested in helping test it out
that would be great. Pei would be the best person to explain to you
how it works, we'll see if he's able to chime in.
(Ah, I just checked and saw he already pointed you to it. If you
want to try it we can help you get it working.)
Thanks
Tim
On 11/25/2013 11:13 PM, digital paula
wrote:
Matt, sorry but I sent the email by accident and
didn't finish my thought. Since there's this file
(historyOf.psv) in the Assertion folder it gives the impression
that Assertion can be configured to account for historyOf.
Though I tried some of the words such as "had diabetes" or
"prior diabetes" and value still 0 for historyOf feature. I
think it is configurable because of the fact the default value
for historyOf is 0 as opposed to <NULL> . Maybe I should
step through the code and see where and when it's assigning 0.
Regards,
Paula
From: [email protected]
To: [email protected]
Subject: RE: Question pertaining to HistoryOf and SegmentID
features
Date: Mon, 25 Nov 2013 23:09:33 -0500
Hi Matt,
it's me again. Are you sure that historyOf feature can't be
configured using Assertion. I was looking around the
Assertion folder and came across a file called
historyOf.psv. What is this?
It contains the following:
has been|historyOf|historyOf
had|historyOf|historyOf
hx of recent|historyOf|historyOf
hx of|historyOf|historyOf
hx|historyOf|historyOf
recent|historyOf|historyOf
s/p|historyOf|historyOf
status post|historyOf|historyOf
post|historyOf|historyOf
previous|historyOf|historyOf
prior|historyOf|historyOf
From: [email protected]
To: [email protected]
Subject: Re: Question pertaining to HistoryOf and
SegmentID features
Date: Tue, 26 Nov 2013 02:50:59 +0000
The ctakes assertion module does not have an option
to set the historyOf attribute. The assertion module
only sets subject, polarity, uncertainty, conditional,
and generic.
Matt
From: digital
paula <[email protected]>
Reply-To: "[email protected]"
<[email protected]>
Date: Monday,
2013-11-25 15:13
To: "[email protected]"
<[email protected]>
Subject: RE:
Question pertaining to HistoryOf and SegmentID
features
