Issue in Jira https://issues.apache.org/jira/browse/CTAKES-385
On Wed, Oct 14, 2015 at 10:55 PM, Lewis John Mcgibbney < [email protected]> wrote: > Hi Folks, > I am using cTAKES 3.2.2 Maven dependencies. > I have some clinical pipeline code along with cTAKES dependencies and some > resources packaged into an uber jar which I am utilizing within my Spark > driver code. When I submit this to the Spark cluster I get a nasty stack > trace [0] with the following being important > > - Caused by: java.lang.IllegalArgumentException: URI is not hierarchical > - at java.io.File.<init>(File.java:418) > - at > org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:565) > - at > it.cnr.iac.CTAKESClinicalPipelineFactory.getTokenProcessingPipeline(CTAKESClinicalPipelineFactory.java:146) > > > The problem here is that > LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:565) looks as > follows > > ExternalResourceFactory.createExternalResourceDescription( > LvgCmdApiResourceImpl.class, > new File(LvgCmdApiResourceImpl.class.getResource( > > "/org/apache/ctakes/lvg/data/config/lvg.properties").toURI())) > > > Here we should be using LvgCmdApiResourceImpl.class.getResourceAsStream, > the transformation to File should then be done if required within > ExternalResourceFactory.createExternalResourceDescription. > > The above is an issue which has been reported on a few occasions and a fix > somewhat proposed for a similar issue here [1][2]. > I am going to submit a patch for this and submit a test. I'll open an > issue in Jira. > Thanks > Lewis > > [0] https://paste.apache.org/gDJa > [1] https://issues.apache.org/jira/browse/CTAKES-307 > [2] https://issues.apache.org/jira/browse/CTAKES-89 > > -- > *Lewis* > -- *Lewis*
