Hi Filip, I think your issue is best dealt with on the user mailing list. Unfortunately, you can't use attachments on the mailing lists. So if you want to post a screenshot you'll have to upload it somewhere else (e.g. http://imgur.com/).
I can confirm your error. Would you mind using the 0.9.0-milestone release? Just change the Flink version in the Maven pom.xml to 0.9.0-milestone-1. Your example works with this version. Best regards, Max On Mon, Apr 13, 2015 at 6:42 PM, Filip Łęczycki <filipleczy...@gmail.com> wrote: > Hi > > I have an issue while running the following line while usig flink v 0.8.1 > (: > val asdf = new AvroTypeInfo[AlignmentRecord](classOf[AlignmentRecord]) > > Alignment record belongs to the package : > org.bdgenomics.formats.avro.AlignmentRecord > > http://mvnrepository.com/artifact/org.bdgenomics.bdg-formats/bdg-formats/0.4.0 > > While trying to run I am receivng following exception: > > Exception in thread "main" java.lang.IndexOutOfBoundsException > at > org.apache.flink.api.java.typeutils.PojoTypeInfo.getPojoFieldAt(PojoTypeInfo.java:178) > at > org.apache.flink.api.java.typeutils.AvroTypeInfo.generateFieldsFromAvroSchema(AvroTypeInfo.java:52) > at > org.apache.flink.api.java.typeutils.AvroTypeInfo.<init>(AvroTypeInfo.java:38) > at flinkTest.FlinkBAMReader$.main(FlinkBAMReader.scala:74) > > While debugging I have noticed that the generated AvroTypeInfo class has a > fields array with 42 elements, while the totalFIelds property has value 52 > (please find screenshot attached) which seems to be the cause of the > exception. Could you please help me o determine what may be the issue with > the parser? Is this some bug in AvroTypeInfo class or the AlignmentRecord > class is somehow corrupted? > > Best Regards/Pozdrawiam, > Filip Łęczycki > > >
