Thanks for the hint. I focused on it and get a strange behavior. If I change from EdgeDirection.ALL (what I need) to EdgeDirection.OUT (or .IN), everything seems okey. The sublist operation was still active.
Then I replaced the sublist with the entire list and there was no exception (EdgeDirection.All/IN/OUT worked). In case of .ALL the algorithm ran until „maximumNumberOfIterations“. How can I limit it and how can I set the termination conditions? Best, Marc Am 10.05.2017 um 18:18 schrieb Stephan Ewen <se...@apache.org<mailto:se...@apache.org>>: Looks like java.util.ArrayList$SubList does not work out of the box with Kryo / Flink. Try registering a custom serializer for it... On Wed, May 10, 2017 at 4:16 PM, Kaepke, Marc <marc.kae...@haw-hamburg.de<mailto:marc.kae...@haw-hamburg.de>> wrote: Hi, a part of my bachelor thesis is an implementation of the Semi-Clustering algorithm [1]. I’m using the Scatter-Gather-Iteration. Each vertex has to know its neighbors and the edge-value between of that. Because Gelly’s vertex doesn’t provide both information, I wrote an CustomVertexValue class. An object contains a set of edges and a list of another custom class called SemiCluster, which contains a list of vertex and a double value. Now I’m able to create vertices like Vertex<Double, CustomVertexValue>. Unfortunately I get an exception if I run my Scatter-Gather-Iteration. Exception in thread "main" org.apache.flink.runtime.client.JobExecutionException: Job execution failed. at org.apache.flink.runtime.jobmanager.JobManager$$anonfun$handleMessage$1$$anonfun$applyOrElse$7.apply$mcV$sp(JobManager.scala:900) at org.apache.flink.runtime.jobmanager.JobManager$$anonfun$handleMessage$1$$anonfun$applyOrElse$7.apply(JobManager.scala:843) at org.apache.flink.runtime.jobmanager.JobManager$$anonfun$handleMessage$1$$anonfun$applyOrElse$7.apply(JobManager.scala:843) at scala.concurrent.impl.Future$PromiseCompletingRunnable.liftedTree1$1(Future.scala:24) at scala.concurrent.impl.Future$PromiseCompletingRunnable.run(Future.scala:24) at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40) at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397) at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) Caused by: java.lang.RuntimeException: Error obtaining the sorted input: Thread 'SortMerger Reading Thread' terminated due to an exception: null at org.apache.flink.runtime.operators.sort.UnilateralSortMerger.getIterator(UnilateralSortMerger.java:619) at org.apache.flink.runtime.operators.BatchTask.getInput(BatchTask.java:1094) at org.apache.flink.runtime.operators.CoGroupWithSolutionSetSecondDriver.run(CoGroupWithSolutionSetSecondDriver.java:203) at org.apache.flink.runtime.operators.BatchTask.run(BatchTask.java:490) at org.apache.flink.runtime.iterative.task.AbstractIterativeTask.run(AbstractIterativeTask.java:146) at org.apache.flink.runtime.iterative.task.IterationTailTask.run(IterationTailTask.java:107) at org.apache.flink.runtime.operators.BatchTask.invoke(BatchTask.java:355) at org.apache.flink.runtime.taskmanager.Task.run(Task.java:655) at java.lang.Thread.run(Thread.java:745) Caused by: java.io.IOException: Thread 'SortMerger Reading Thread' terminated due to an exception: null at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ThreadBase.run(UnilateralSortMerger.java:799) Caused by: java.lang.NullPointerException at java.util.ArrayList$SubList.checkForComodification(ArrayList.java:1230) at java.util.ArrayList$SubList.size(ArrayList.java:1040) at java.util.AbstractList.add(AbstractList.java:108) at com.esotericsoftware.kryo.serializers.CollectionSerializer.read(CollectionSerializer.java:116) at com.esotericsoftware.kryo.serializers.CollectionSerializer.read(CollectionSerializer.java:22) at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:761) at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.deserialize(KryoSerializer.java:232) at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.deserialize(KryoSerializer.java:246) at org.apache.flink.api.java.typeutils.runtime.TupleSerializer.deserialize(TupleSerializer.java:144) at org.apache.flink.api.java.typeutils.runtime.TupleSerializer.deserialize(TupleSerializer.java:30) at org.apache.flink.runtime.plugable.ReusingDeserializationDelegate.read(ReusingDeserializationDelegate.java:57) at org.apache.flink.runtime.io<http://org.apache.flink.runtime.io/>.network.api.serialization.SpillingAdaptiveSpanningRecordDeserializer.getNextRecord(SpillingAdaptiveSpanningRecordDeserializer.java:109) at org.apache.flink.runtime.io<http://org.apache.flink.runtime.io/>.network.api.reader.AbstractRecordReader.getNextRecord(AbstractRecordReader.java:72) at org.apache.flink.runtime.io<http://org.apache.flink.runtime.io/>.network.api.reader.MutableRecordReader.next(MutableRecordReader.java:42) at org.apache.flink.runtime.operators.util.ReaderIterator.next(ReaderIterator.java:59) at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ReadingThread.go(UnilateralSortMerger.java:973) at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ThreadBase.run(UnilateralSortMerger.java:796) Process finished with exit code 1 ——————————— Maybe Gelly isn’t able to handle my CustomVertexValue!? The ScatterFunctions works fine. Thanks a lot Best, Marc [1] http://www.dcs.bbk.ac.uk/~dell/teaching/cc/paper/sigmod10/p135-malewicz.pdf chapter 5.4 (page 141)
