Hi John,
yes I've tried to insert a no-arguments constructor but the problem seems
to be another one.This is my code, an input format with a vertexreader to
read triple as RDF.
import java.io.IOException;
import java.util.ArrayList;
import java.lang.InterruptedException;
import org.apache.giraph.graph.Vertex;
import org.apache.giraph.edge.Edge;
import org.apache.giraph.edge.EdgeFactory;
import org.apache.giraph.io.VertexReader;
import org.apache.giraph.io.VertexInputFormat;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.NullWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.InputSplit;
import org.apache.hadoop.mapreduce.RecordReader;
import org.apache.hadoop.mapreduce.lib.input.LineRecordReader;
import org.apache.hadoop.mapreduce.TaskAttemptContext;
public abstract class SimpleRDFVertexInputFormat extends VertexInputFormat
<Text,NullWritable,Text> {
public SimpleRDFVertexInputFormat() {
// TODO Auto-generated constructor stub
super();
}
public VertexReader<Text,NullWritable,Text>
createVertexReader(InputSplit split,TaskAttemptContext context) throws
IOException{
return new SimpleRDFVertexReader();
}
public class SimpleRDFVertexReader extends
VertexReader<Text,NullWritable,Text>{
private RecordReader<LongWritable,Text> lineRecordReader;
private TaskAttemptContext context;
@Override
public void initialize(InputSplit inputsplit, TaskAttemptContext
context) throws IOException, InterruptedException{
this.setContext(context);
lineRecordReader= new LineRecordReader();
lineRecordReader.initialize(inputsplit, context);
}
@Override
public final boolean nextVertex() throws IOException,
InterruptedException{
return lineRecordReader.nextKeyValue();
}
@Override
public final Vertex<Text,NullWritable,Text> getCurrentVertex()
throws IOException, InterruptedException{
Text line = lineRecordReader.getCurrentValue();
Vertex<Text,NullWritable,Text> vertex =
getConf().createVertex();
String[] elements = line.toString().split(" ");
Text firstele = new Text(elements[0]);
int len1 = firstele.getLength();
Text subject = new Text(firstele.toString().substring(1,
len1-1));
Text secondele = new Text(elements[1]);
int len2 = secondele.getLength();
Text predicate = new Text(secondele.toString().substring(1,
len2-1));
Text object = new Text(elements[2]);
ArrayList<Edge<Text,Text>> edge = new
ArrayList<Edge<Text,Text>>();
edge.add(EdgeFactory.create(object, predicate) );
vertex.initialize(subject, null, edge );
return vertex;
}
@Override
public void close() throws IOException{
lineRecordReader.close();
}
@Override
public float getProgress()throws IOException,InterruptedException{
return lineRecordReader.getProgress();
}
public TaskAttemptContext getContext() {
return context;
}
public void setContext(TaskAttemptContext context) {
this.context = context;
}
}
}
2014-07-01 4:23 GMT+02:00 John Yost <soozandjohny...@gmail.com>:
> Hi Carmen,
>
> Question--did you only define an arguments constructor? If so, I think
> you are getting this because you did not define a no-arguments constructor
> with public visibility. If this is not the case, I recommend posting your
> source code and I will be happy to help.
>
> --John
>
>
> On Mon, Jun 30, 2014 at 9:38 AM, Carmen Manzulli <carmenmanzu...@gmail.com
> > wrote:
>
>> Hi,
>>
>> I'm trying to run a selectionComputation with my own code for
>> VertexInputFormat but giraph' job starts to work and then fails with:
>>
>>
>>
>>
>> java.lang.IllegalStateException: run: Caught an unrecoverable exception
>> newInstance: Couldn't instantiate sisinflab.SimpleRDFVertexInputFormat
>> at org.apache.giraph.graph.GraphMapper.run(GraphMapper.java:101)
>> at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:764)
>> at org.apache.hadoop.mapred.MapTask.run(MapTask.java:364)
>> at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
>> at java.security.AccessController.doPrivileged(Native Method)
>> at javax.security.auth.Subject.doAs(Subject.java:415)
>> at
>> org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
>> at org.apache.hadoop.mapred.Child.main(Child.java:249)
>> Caused by: java.lang.IllegalStateException: newInstance: Couldn't
>> instantiate sisinflab.SimpleRDFVertexInputFormat
>> at
>> org.apache.giraph.utils.ReflectionUtils.newInstance(ReflectionUtils.java:105)
>> at
>> org.apache.giraph.conf.ImmutableClassesGiraphConfiguration.createVertexInputFormat(ImmutableClassesGiraphConfiguration.java:235)
>> at
>> org.apache.giraph.conf.ImmutableClassesGiraphConfiguration.createWrappedVertexInputFormat(ImmutableClassesGiraphConfiguration.java:246)
>> at
>> org.apache.giraph.graph.GraphTaskManager.checkInput(GraphTaskManager.java:171)
>> at
>> org.apache.giraph.graph.GraphTaskManager.setup(GraphTaskManager.java:207)
>> at org.apache.giraph.graph.GraphMapper.setup(GraphMapper.java:59)
>> at org.apache.giraph.graph.GraphMapper.run(GraphMapper.java:89)
>> ... 7 more
>> Caused by: java.lang.InstantiationException
>> at
>> sun.reflect.InstantiationExceptionConstructorAccessorImpl.newInstance(InstantiationExceptionConstructorAccessorImpl.java:48)
>> at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
>> at java.lang.Class.newInstance(Class.java:374)
>> at
>> org.apache.giraph.utils.ReflectionUtils.newInstance(ReflectionUtils.java:103)
>> ... 13 more
>>
>>
>> what does it mean? where is the problem?
>>
>> Who can help me?
>>
>> Carmen
>>
>>
>
