Contrail is a DeNovo Assembler which uses Map Reduce and Avro. http://en.wikipedia.org/wiki/Contrail As part of this effort, we developed an efficient FastQ InputFormat reader for processing FastQ files in parallel.
http://kbase.science.energy.gov/about/about/ is an effort by the DOE to create a modular platform for bioinformatics. I think its using hadoop under the hood for job scheduling and other functions. Dr. Michael Schatz (http://www.cbcb.umd.edu/~mschatz/) who is one of the developers of Contrail has a bunch of work on porting bioinformatics to Hadoop. J On Fri, Aug 16, 2013 at 2:42 PM, Jay Vyas <jayunit...@gmail.com> wrote: > there are literally hundreds. Here is a great review article for how > mapreduce is used in the bioinformatics algorithms space: > > http://www.biomedcentral.com/1471-2105/11/S12/S1 > > > On Fri, Aug 16, 2013 at 3:38 PM, Felipe Gutierrez < > felipe.o.gutier...@gmail.com> wrote: > >> Hello, >> >> Does anybody know an e-Science application to run on Hadoop? >> >> Thanks. >> Felipe >> >> -- >> *-- >> -- Felipe Oliveira Gutierrez >> -- felipe.o.gutier...@gmail.com >> -- https://sites.google.com/site/lipe82/Home/diaadia* >> > > > > -- > Jay Vyas > http://jayunit100.blogspot.com >
