Is your data in any given file a bunch of key-value pairs? If that isn't the case, I'm wondering how writing a single large key-value into a sequence file helps. It won't. May be you can give an example of your input data?
If indeed they are a bunch of smaller sized key-value pairs, you can write your own custom InputFormat that reads the data from your input files one k-v pair after another, and feed it to your MR job. There isn't any need for converting them to sequence-files at that point. Thanks +Vinod Hortonworks Inc. http://hortonworks.com/ -- CONFIDENTIALITY NOTICE NOTICE: This message is intended for the use of the individual or entity to which it is addressed and may contain information that is confidential, privileged and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, you are hereby notified that any printing, copying, dissemination, distribution, disclosure or forwarding of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and delete it from your system. Thank You.