Available HBase API allows to compact table's regions independently.
It can be cron job, script or client application which connects to HBase 
cluster, selects regions and trigger compaction,
but you have to write this piece of software yourself.

Best regards,
Vladimir Rodionov
Principal Platform Engineer
Carrier IQ, www.carrieriq.com
e-mail: vrodio...@carrieriq.com

________________________________________
From: Patrick Schless [patrick.schl...@gmail.com]
Sent: Friday, December 13, 2013 4:36 PM
To: user
Subject: Re: 3-Hour Periodic Network/CPU/Disk/Latency Spikes

Ah, sorry about the attachment (didn't realize they weren't allowed).
Here's the picture I was trying to attach:
http://www.plainlystated.com/hbase_major_compactions.png

It sounds like you're right, Vladimir, about the compaction storm, though I
don't understand why it's about every three hours instead of every day. In
the book [1] I see the suggestion that they be managed manually. I don't
see, however, any advice on what do do after turning auto-compaction off.
Are there best practices around scheduling and monitoring the process?

Thanks,
Patrick

[1]
http://hbase.apache.org/book/important_configurations.html#managed.compactions



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