Gentle reminder :) [image: Inline images 1]
Dr Mich Talebzadeh LinkedIn * https://www.linkedin.com/profile/view?id=AAEAAAAWh2gBxianrbJd6zP6AcPCCdOABUrV8Pw <https://www.linkedin.com/profile/view?id=AAEAAAAWh2gBxianrbJd6zP6AcPCCdOABUrV8Pw>* http://talebzadehmich.wordpress.com *Disclaimer:* Use it at your own risk. Any and all responsibility for any loss, damage or destruction of data or any other property which may arise from relying on this email's technical content is explicitly disclaimed. The author will in no case be liable for any monetary damages arising from such loss, damage or destruction. On 28 October 2016 at 23:05, Ted Yu <yuzhih...@gmail.com> wrote: > You should have written to the mailing list earlier :-) > > hbase community is very responsive. > > On Fri, Oct 28, 2016 at 2:53 PM, Pat Ferrel <p...@occamsmachete.com> wrote: > > > After passing in hbase-site.xml with the increased timeout it completes > > pretty fast with no errors. > > > > Thanks Ted, we’ve been going crazy trying to figure what was going on. We > > moved from having Hbase installed on the Spark driver machine (though not > > used) to containerized installation, where the config was left default on > > the driver and only existed in the containers. We were passing in the > empty > > config to the spark-submit but it didn’t match the containers and fixing > > that has made the system much happier. > > > > Anyway good call, we will be more aware of this with other services now. > > Thanks for ending our weeks long fight! :-) > > > > > > On Oct 28, 2016, at 11:29 AM, Ted Yu <yuzhih...@gmail.com> wrote: > > > > bq. with 400 threads hitting HBase at the same time > > > > How many regions are serving the 400 threads ? > > How many region servers do you have ? > > > > If the regions are spread relatively evenly across the cluster, the above > > may not be big issue. > > > > On Fri, Oct 28, 2016 at 11:21 AM, Pat Ferrel <p...@occamsmachete.com> > > wrote: > > > > > Ok, will do. > > > > > > So the scanner does not indicate of itself that I’ve missed something > in > > > handling the data. If not index, then made a fast lookup “key”? I ask > > > because the timeout change may work but not be the optimal solution. > The > > > stage that fails is very long compared to other stages. And with 400 > > > threads hitting HBase at the same time, this seems like something I may > > > need to restructure and any advice about that would be welcome. > > > > > > HBase is 1.2.3 > > > > > > > > > On Oct 28, 2016, at 10:36 AM, Ted Yu <yuzhih...@gmail.com> wrote: > > > > > > For your first question, you need to pass hbase-site.xml which has > config > > > parameters affecting client operations to Spark executors. > > > > > > bq. missed indexing some column > > > > > > hbase doesn't have indexing (as in the sense of traditional RDBMS). > > > > > > Let's see what happens after hbase-site.xml is passed to executors. > > > > > > BTW Can you tell us the release of hbase you're using ? > > > > > > > > > > > > On Fri, Oct 28, 2016 at 10:22 AM, Pat Ferrel <p...@occamsmachete.com> > > > wrote: > > > > > >> So to clarify there are some values in hbase/conf/hbase-site.xml that > > are > > >> needed by the calling code in the Spark driver and executors and so > must > > > be > > >> passed using --files to spark-submit? If so I can do this. > > >> > > >> But do I have a deeper issue? Is it typical to need a scan like this? > > > Have > > >> I missed indexing some column maybe? > > >> > > >> > > >> On Oct 28, 2016, at 9:59 AM, Ted Yu <yuzhih...@gmail.com> wrote: > > >> > > >> Mich: > > >> bq. on table 'hbase:meta' *at region=hbase:meta,,1.1588230740 > > >> > > >> What you observed was different issue. > > >> The above looks like trouble with locating region(s) during scan. > > >> > > >> On Fri, Oct 28, 2016 at 9:54 AM, Mich Talebzadeh < > > >> mich.talebza...@gmail.com> > > >> wrote: > > >> > > >>> This is an example I got > > >>> > > >>> warning: there were two deprecation warnings; re-run with > -deprecation > > >> for > > >>> details > > >>> rdd1: org.apache.spark.rdd.RDD[(String, String)] = > > MapPartitionsRDD[77] > > >> at > > >>> map at <console>:151 > > >>> defined class columns > > >>> dfTICKER: org.apache.spark.sql.Dataset[columns] = [KEY: string, > > TICKER: > > >>> string] > > >>> org.apache.hadoop.hbase.client.RetriesExhaustedException: Failed > after > > >>> attempts=36, exceptions: > > >>> *Fri Oct 28 13:13:46 BST 2016, null, java.net. > SocketTimeoutException: > > >>> callTimeout=60000, callDuration=68411: row > > >>> 'MARKETDATAHBASE,,00000000000000' on table 'hbase:meta' *at > > >>> region=hbase:meta,,1.1588230740, hostname=rhes564,16201, > 1477246132044, > > >>> seqNum=0 > > >>> at > > >>> org.apache.hadoop.hbase.client.RpcRetryingCallerWithReadRepli > > >>> cas.throwEnrichedException(RpcRetryingCallerWithReadRepli > cas.java:276) > > >>> at > > >>> org.apache.hadoop.hbase.client.ScannerCallableWithReplicas.call( > > >>> ScannerCallableWithReplicas.java:210) > > >>> at > > >>> org.apache.hadoop.hbase.client.ScannerCallableWithReplicas.call( > > >>> ScannerCallableWithReplicas.java:60) > > >>> at > > >>> org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithoutRetries( > > >>> RpcRetryingCaller.java:210) > > >>> > > >>> > > >>> > > >>> Dr Mich Talebzadeh > > >>> > > >>> > > >>> > > >>> LinkedIn * https://www.linkedin.com/profile/view?id= > > >>> AAEAAAAWh2gBxianrbJd6zP6AcPCCdOABUrV8Pw > > >>> <https://www.linkedin.com/profile/view?id= > > > AAEAAAAWh2gBxianrbJd6zP6AcPCCd > > >>> OABUrV8Pw>* > > >>> > > >>> > > >>> > > >>> http://talebzadehmich.wordpress.com > > >>> > > >>> > > >>> *Disclaimer:* Use it at your own risk. Any and all responsibility for > > > any > > >>> loss, damage or destruction of data or any other property which may > > > arise > > >>> from relying on this email's technical content is explicitly > > disclaimed. > > >>> The author will in no case be liable for any monetary damages arising > > >> from > > >>> such loss, damage or destruction. > > >>> > > >>> > > >>> > > >>> On 28 October 2016 at 17:52, Pat Ferrel <p...@occamsmachete.com> > wrote: > > >>> > > >>>> I will check that, but if that is a server startup thing I was not > > > aware > > >>> I > > >>>> had to send it to the executors. So it’s like a connection timeout > > from > > >>>> executor code? > > >>>> > > >>>> > > >>>> On Oct 28, 2016, at 9:48 AM, Ted Yu <yuzhih...@gmail.com> wrote: > > >>>> > > >>>> How did you change the timeout(s) ? > > >>>> > > >>>> bq. timeout is currently set to 60000 > > >>>> > > >>>> Did you pass hbase-site.xml using --files to Spark job ? > > >>>> > > >>>> Cheers > > >>>> > > >>>> On Fri, Oct 28, 2016 at 9:27 AM, Pat Ferrel <p...@occamsmachete.com> > > >>> wrote: > > >>>> > > >>>>> Using standalone Spark. I don’t recall seeing connection lost > errors, > > >>> but > > >>>>> there are lots of logs. I’ve set the scanner and RPC timeouts to > > large > > >>>>> numbers on the servers. > > >>>>> > > >>>>> But I also saw in the logs: > > >>>>> > > >>>>> org.apache.hadoop.hbase.client.ScannerTimeoutException: 381788ms > > >>>>> passed since the last invocation, timeout is currently set to 60000 > > >>>>> > > >>>>> Not sure where that is coming from. Does the driver machine making > > >>>> queries > > >>>>> need to have the timeout config also? > > >>>>> > > >>>>> And why so large, am I doing something wrong? > > >>>>> > > >>>>> > > >>>>> On Oct 28, 2016, at 8:50 AM, Ted Yu <yuzhih...@gmail.com> wrote: > > >>>>> > > >>>>> Mich: > > >>>>> The OutOfOrderScannerNextException indicated problem with read from > > >>>> hbase. > > >>>>> > > >>>>> How did you know connection to Spark cluster was lost ? > > >>>>> > > >>>>> Cheers > > >>>>> > > >>>>> On Fri, Oct 28, 2016 at 8:47 AM, Mich Talebzadeh < > > >>>>> mich.talebza...@gmail.com> > > >>>>> wrote: > > >>>>> > > >>>>>> Looks like it lost the connection to Spark cluster. > > >>>>>> > > >>>>>> What mode you are using with Spark, Standalone, Yarn or others. > The > > >>>> issue > > >>>>>> looks like a resource manager issue. > > >>>>>> > > >>>>>> I have seen this when running Zeppelin with Spark on Hbase. > > >>>>>> > > >>>>>> HTH > > >>>>>> > > >>>>>> Dr Mich Talebzadeh > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> LinkedIn * https://www.linkedin.com/profile/view?id= > > >>>>>> AAEAAAAWh2gBxianrbJd6zP6AcPCCdOABUrV8Pw > > >>>>>> <https://www.linkedin.com/profile/view?id= > > >>>> AAEAAAAWh2gBxianrbJd6zP6AcPCCd > > >>>>>> OABUrV8Pw>* > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> http://talebzadehmich.wordpress.com > > >>>>>> > > >>>>>> > > >>>>>> *Disclaimer:* Use it at your own risk. Any and all responsibility > > for > > >>>> any > > >>>>>> loss, damage or destruction of data or any other property which > may > > >>>> arise > > >>>>>> from relying on this email's technical content is explicitly > > >>> disclaimed. > > >>>>>> The author will in no case be liable for any monetary damages > > arising > > >>>>> from > > >>>>>> such loss, damage or destruction. > > >>>>>> > > >>>>>> > > >>>>>> > > >>>>>> On 28 October 2016 at 16:38, Pat Ferrel <p...@occamsmachete.com> > > >>> wrote: > > >>>>>> > > >>>>>>> I’m getting data from HBase using a large Spark cluster with > > >>>> parallelism > > >>>>>>> of near 400. The query fails quire often with the message below. > > >>>>>> Sometimes > > >>>>>>> a retry will work and sometimes the ultimate failure results > > > (below). > > >>>>>>> > > >>>>>>> If I reduce parallelism in Spark it slows other parts of the > > >>> algorithm > > >>>>>>> unacceptably. I have also experimented with very large > RPC/Scanner > > >>>>>> timeouts > > >>>>>>> of many minutes—to no avail. > > >>>>>>> > > >>>>>>> Any clues about what to look for or what may be setup wrong in my > > >>>>> tables? > > >>>>>>> > > >>>>>>> Job aborted due to stage failure: Task 44 in stage 147.0 failed 4 > > >>>> times, > > >>>>>>> most recent failure: Lost task 44.3 in stage 147.0 (TID 24833, > > >>>>>>> ip-172-16-3-9.eu-central-1.compute.internal): > > >>> org.apache.hadoop.hbase. > > >>>>>> DoNotRetryIOException: > > >>>>>>> Failed after retry of OutOfOrderScannerNextException: was there > a > > >>> rpc > > >>>>>>> timeout?+details > > >>>>>>> Job aborted due to stage failure: Task 44 in stage 147.0 failed 4 > > >>>> times, > > >>>>>>> most recent failure: Lost task 44.3 in stage 147.0 (TID 24833, > > >>>>>>> ip-172-16-3-9.eu-central-1.compute.internal): > > >>> org.apache.hadoop.hbase. > > >>>>>> DoNotRetryIOException: > > >>>>>>> Failed after retry of OutOfOrderScannerNextException: was there > a > > >>> rpc > > >>>>>>> timeout? at org.apache.hadoop.hbase.client.ClientScanner.next( > > >>>>>> ClientScanner.java:403) > > >>>>>>> at org.apache.hadoop.hbase.mapreduce.TableRecordReaderImpl. > > >>>>> nextKeyValue( > > >>>>>>> TableRecordReaderImpl.java:232) at org.apache.hadoop.hbase. > > >>>>>>> mapreduce.TableRecordReader.nextKeyValue( > > > TableRecordReader.java:138) > > >>>> at > > >>>>>>> > > >>>>>> > > >>>>> > > >>>>> > > >>>> > > >>>> > > >>> > > >> > > >> > > > > > > > > > > >
