If possible, can you try the following fix ?
Thanks
diff --git
a/hbase-server/src/main/java/org/apache/hadoop/hbase/io/hfile/HFile.java
b/hbase-server/src/main/java/org/apache/hadoop/hbase/io/hfile/HFile.java
index feddc2c..ea01f76 100644
--- a/hbase-server/src/main/java/org/apache/hadoop/hbase/io/hfile/HFile.java
+++ b/hbase-server/src/main/java/org/apache/hadoop/hbase/io/hfile/HFile.java
@@ -834,7 +834,9 @@ public class HFile {
int read = in.read(pbuf);
if (read != pblen) throw new IOException("read=" + read + ",
wanted=" + pblen);
if (ProtobufUtil.isPBMagicPrefix(pbuf)) {
- parsePB(HFileProtos.FileInfoProto.parseDelimitedFrom(in));
+ HFileProtos.FileInfoProto.Builder builder =
HFileProtos.FileInfoProto.newBuilder();
+ ProtobufUtil.mergeDelimitedFrom(builder, in);
+ parsePB(builder.build());
} else {
if (in.markSupported()) {
in.reset();
On Fri, Jul 14, 2017 at 4:01 AM, Daniel Jeliński <djelins...@gmail.com>
wrote:
> Hello,
> While playing with MOB feature (on HBase 1.2.0-cdh5.10.0), I accidentally
> created a table that killed every region server it was assigned to. I can't
> test it with other revisions, and I couldn't find it in JIRA.
>
> I'm reporting it here, let me know if there's a better place.
>
> Gist of code used to create the table:
>
> private String table = "poisonPill";
> private byte[] familyBytes = Bytes.toBytes("cf");
> private void createTable(Connection conn) throws IOException {
> Admin hbase_admin = conn.getAdmin();
> HTableDescriptor htable = new HTableDescriptor(TableName.
> valueOf(table));
> HColumnDescriptor hfamily = new HColumnDescriptor(familyBytes);
> hfamily.setMobEnabled(true);
> htable.setConfiguration("hfile.format.version","3");
> htable.addFamily(hfamily);
> hbase_admin.createTable(htable);
> }
> private void killTable(Connection conn) throws IOException {
> Table tbl = conn.getTable(TableName.valueOf(table));
> byte[] data = new byte[1<<26];
> byte[] smalldata = new byte[0];
> Put put = new Put(Bytes.toBytes("1"));
> put.addColumn(familyBytes, data, smalldata);
> tbl.put(put);
> }
>
> Resulting exception on region server:
>
> 2017-07-11 09:34:54,704 WARN
> org.apache.hadoop.hbase.regionserver.HStore: Failed validating store
> file hdfs://sandbox/hbase/data/default/poisonPill/
> f82e20f32302dfdd95c89ecc3be5a211/.tmp/7858d223eddd4199ad220fc77bb612eb,
> retrying num=0
> org.apache.hadoop.hbase.io.hfile.CorruptHFileException: Problem
> reading HFile Trailer from file
> hdfs://sandbox/hbase/data/default/poisonPill/
> f82e20f32302dfdd95c89ecc3be5a211/.tmp/7858d223eddd4199ad220fc77bb612eb
> at org.apache.hadoop.hbase.io.hfile.HFile.pickReaderVersion(
> HFile.java:497)
> at org.apache.hadoop.hbase.io.hfile.HFile.createReader(
> HFile.java:525)
> at org.apache.hadoop.hbase.regionserver.StoreFile$Reader.
> <init>(StoreFile.java:1105)
> at org.apache.hadoop.hbase.regionserver.StoreFileInfo.
> open(StoreFileInfo.java:265)
> at org.apache.hadoop.hbase.regionserver.StoreFile.open(
> StoreFile.java:404)
> at org.apache.hadoop.hbase.regionserver.StoreFile.
> createReader(StoreFile.java:509)
> at org.apache.hadoop.hbase.regionserver.StoreFile.
> createReader(StoreFile.java:499)
> at org.apache.hadoop.hbase.regionserver.HStore.
> createStoreFileAndReader(HStore.java:675)
> at org.apache.hadoop.hbase.regionserver.HStore.
> createStoreFileAndReader(HStore.java:667)
> at org.apache.hadoop.hbase.regionserver.HStore.
> validateStoreFile(HStore.java:1746)
> at org.apache.hadoop.hbase.regionserver.HStore.
> flushCache(HStore.java:942)
> at org.apache.hadoop.hbase.regionserver.HStore$
> StoreFlusherImpl.flushCache(HStore.java:2299)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> internalFlushCacheAndCommit(HRegion.java:2372)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> internalFlushcache(HRegion.java:2102)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> replayRecoveredEdits(HRegion.java:4139)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> replayRecoveredEditsIfAny(HRegion.java:3934)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> initializeRegionInternals(HRegion.java:828)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> initialize(HRegion.java:799)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> openHRegion(HRegion.java:6480)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> openHRegion(HRegion.java:6441)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> openHRegion(HRegion.java:6412)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> openHRegion(HRegion.java:6368)
> at org.apache.hadoop.hbase.regionserver.HRegion.
> openHRegion(HRegion.java:6319)
> at org.apache.hadoop.hbase.regionserver.handler.
> OpenRegionHandler.openRegion(OpenRegionHandler.java:362)
> at org.apache.hadoop.hbase.regionserver.handler.
> OpenRegionHandler.process(OpenRegionHandler.java:129)
> at org.apache.hadoop.hbase.executor.EventHandler.run(
> EventHandler.java:129)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: com.google.protobuf.InvalidProtocolBufferException:
> Protocol message was too large. May be malicious. Use
> CodedInputStream.setSizeLimit() to increase the size limit.
> at com.google.protobuf.InvalidProtocolBufferException
> .sizeLimitExceeded(InvalidProtocolBufferException.java:110)
> at com.google.protobuf.CodedInputStream.refillBuffer(
> CodedInputStream.java:755)
> at com.google.protobuf.CodedInputStream.isAtEnd(
> CodedInputStream.java:701)
> at com.google.protobuf.CodedInputStream.readTag(
> CodedInputStream.java:99)
> at org.apache.hadoop.hbase.protobuf.generated.
> HFileProtos$FileInfoProto.<init>(HFileProtos.java:82)
> at org.apache.hadoop.hbase.protobuf.generated.
> HFileProtos$FileInfoProto.<init>(HFileProtos.java:46)
> at org.apache.hadoop.hbase.protobuf.generated.
> HFileProtos$FileInfoProto$1.parsePartialFrom(HFileProtos.java:135)
> at org.apache.hadoop.hbase.protobuf.generated.
> HFileProtos$FileInfoProto$1.parsePartialFrom(HFileProtos.java:130)
> at com.google.protobuf.AbstractParser.parsePartialFrom(
> AbstractParser.java:200)
> at com.google.protobuf.AbstractParser.parsePartialDelimitedFrom(
> AbstractParser.java:241)
> at com.google.protobuf.AbstractParser.parseDelimitedFrom(
> AbstractParser.java:253)
> at com.google.protobuf.AbstractParser.parseDelimitedFrom(
> AbstractParser.java:259)
> at com.google.protobuf.AbstractParser.parseDelimitedFrom(
> AbstractParser.java:49)
> at org.apache.hadoop.hbase.protobuf.generated.
> HFileProtos$FileInfoProto.parseDelimitedFrom(HFileProtos.java:297)
> at org.apache.hadoop.hbase.io.hfile.HFile$FileInfo.read(
> HFile.java:752)
> at org.apache.hadoop.hbase.io.hfile.HFileReaderV2.<init>(
> HFileReaderV2.java:161)
> at org.apache.hadoop.hbase.io.hfile.HFileReaderV3.<init>(
> HFileReaderV3.java:77)
> at org.apache.hadoop.hbase.io.hfile.HFile.pickReaderVersion(
> HFile.java:487)
> ... 28 more
>
> After a number of tries, RegionServer service is aborted.
>
> I wasn't able to reproduce this issue with MOB disabled.
>
> Regards,
>
> Daniel
>
