Hi Meeran, BlockHeaders output has NegativeArraySizeException while reading a block. Did you try scanning the table or specific rowkey range from the region? Is it all good? Also, since you were able to upgrade the cluster to 2.2.4, I am assuming all services are good, but can you once confirm inconsistencies using hbck and fsck commands for both HBase and HDFS?
On 2020/07/08 07:44:36, Meeran <meeran.gladiat...@gmail.com> wrote: > Hi Sean, > > > > We upgraded the cluster to latest stable version HBase-2.2.4. We are still > facing the issue. Any help on this please? > > > > Thanks, > > Meeran > > > > ---- On Mon, 06 Jul 2020 14:24:16 +0530 test gmail test > <meeran.gladiat...@gmail.com> wrote ---- > > > Hi Sean, > > > > printblocks output - https://pastebin.com/EYUpi6LL > > blockheaders output - https://pastebin.com/TJBqgwsp > > > > We are yet to test it on HBase-2.2. Will upgrade the cluster and let you > know. Thanks for the help. > > > > Regards, > > Meeran > > > > > > ---- On Sat, 04 Jul 2020 05:26:46 +0530 Sean Busbey > <mailto:bus...@apache.org> wrote ---- > > > > > > > > > > > > File attachments won't work on the mailing list. Can you put the files on > some hosting service? > > Can you reproduce the problem on hbase 2.2? HBase 2.1 has been EOM since > May. > > > On Fri, Jul 3, 2020, 18:20 Mohamed Meeran > <mailto:meeran.gladiat...@gmail.com> > wrote: > > > Hi, > > > > We are using HBase-2.1.9 (Hadoop-3.1.3) in our setup. In the logs, we see > > major compaction failed for some of the regions with the following error > > logs. > > > > Caused by: java.io.IOException: Could not iterate > > StoreFileScanner[HFileScanner for reader > > reader=hdfs://TestCluster/hbasedata/data/Test/Test/6472f3839fc9b0a1d4b64e182043bc52/hb/2ec37243628b4a03ae3d937da4c27081, > > > > compression=none, cacheConf=blockCache=LruBlockCache{blockCount=332, > > currentSize=485.88 MB, freeSize=333.32 MB, maxSize=819.20 MB, > > heapSize=485.88 MB, minSize=778.24 MB, minFactor=0.95, multiSize=389.12 MB, > > multiFactor=0.5, singleSize=194.56 MB, singleFactor=0.25}, > > cacheDataOnRead=true, cacheDataOnWrite=false, cacheIndexesOnWrite=false, > > cacheBloomsOnWrite=false, cacheEvictOnClose=false, > > cacheDataCompressed=false, prefetchOnOpen=false, > > firstKey=Optional[10259783_1010157000000008129/hb:B/1490097103780/Put/seqid=0], > > > > lastKey=Optional[10260211_1009658000000470017/hb:H/1490097295354/Put/seqid=0], > > > > avgKeyLen=43, avgValueLen=213357, entries=10134, length=2163318554, > > cur=10259783_1010157000000008851/hb:B/1490097148981/Put/vlen=16591695/seqid=0] > > > > at > > org.apache.hadoop.hbase.regionserver.StoreFileScanner.next(StoreFileScanner.java:217) > > > > at > > org.apache.hadoop.hbase.regionserver.KeyValueHeap.next(KeyValueHeap.java:120) > > > > at > > org.apache.hadoop.hbase.regionserver.StoreScanner.next(StoreScanner.java:654) > > > > at > > org.apache.hadoop.hbase.regionserver.KeyValueHeap.next(KeyValueHeap.java:153) > > > > at > > org.apache.hadoop.hbase.regionserver.HRegion$RegionScannerImpl.populateResult(HRegion.java:6593) > > > > at > > org.apache.hadoop.hbase.regionserver.HRegion$RegionScannerImpl.nextInternal(HRegion.java:6757) > > > > at > > org.apache.hadoop.hbase.regionserver.HRegion$RegionScannerImpl.nextRaw(HRegion.java:6527) > > > > at > > org.apache.hadoop.hbase.regionserver.RSRpcServices.scan(RSRpcServices.java:3158) > > > > at > > org.apache.hadoop.hbase.regionserver.RSRpcServices.scan(RSRpcServices.java:3407) > > > > ... 5 more > > Caused by: java.io.IOException: Invalid onDisksize=-969694035: expected to > > be at least 33 and at most 2147483647, or -1 > > at > > org.apache.hadoop.hbase.io.hfile.HFileBlock$FSReaderImpl.checkAndGetSizeAsInt(HFileBlock.java:1673) > > > > at > > org.apache.hadoop.hbase.io.hfile.HFileBlock$FSReaderImpl.readBlockDataInternal(HFileBlock.java:1746) > > > > at > > org.apache.hadoop.hbase.io.hfile.HFileBlock$FSReaderImpl.readBlockData(HFileBlock.java:1610) > > > > at > > org.apache.hadoop.hbase.io.hfile.HFileReaderImpl.readBlock(HFileReaderImpl.java:1496) > > > > at > > org.apache.hadoop.hbase.io.hfile.HFileReaderImpl$HFileScannerImpl.readNextDataBlock(HFileReaderImpl.java:931) > > > > at > > org.apache.hadoop.hbase.io.hfile.HFileReaderImpl$HFileScannerImpl.isNextBlock(HFileReaderImpl.java:1064) > > > > at > > org.apache.hadoop.hbase.io.hfile.HFileReaderImpl$HFileScannerImpl.positionForNextBlock(HFileReaderImpl.java:1058) > > > > at > > org.apache.hadoop.hbase.io.hfile.HFileReaderImpl$HFileScannerImpl._next(HFileReaderImpl.java:1076) > > > > at > > org.apache.hadoop.hbase.io.hfile.HFileReaderImpl$HFileScannerImpl.next(HFileReaderImpl.java:1097) > > > > at > > org.apache.hadoop.hbase.regionserver.StoreFileScanner.next(StoreFileScanner.java:208) > > > > ... 13 more > > > > We analysed a file using the hfile tool. Attaching the output for > > printblocks and printblockheaders. > > > > Any help to fix this would be greatly appreciated. > > -- > > Thanks in advance, > > Meeran > >
