You might find 
https://bz.apache.org/bugzilla/show_bug.cgi?id=65353
interesting.

With the next nightly build or build from trunk, you should be able to use the 
new property "backend_metrics_percentile_estimator" with a value of "R_3" to 
lessen the difference between both reports. But keep in mind, that the HTML 
Report use a sliding window, while the Aggregate Report does not (and will 
eventually OOM).

Felix

Am 03.06.21 um 17:46 schrieb Deepak Chaudhari:
> I need to send both the reports to the client and surely the question
> will come "Why is there so much difference?"
> If there is any way with which we can generate almost similar
> aggregate and HTML reports?
>
> On Thu, Jun 3, 2021 at 9:00 PM Felix Schumacher
> <[email protected]
> <mailto:[email protected]>> wrote:
>
>     Without the actual data it is impossible to say, if the reports
>     are wrong, or if they follow different ways to calculate a percentile.
>
>     The problem here is, that the two reports are using different
>     algorithms to calculate the percentiles. We are working with
>     discrete numbers and here a percentile is more like a range than a
>     single (correct or wrong) number. Say, you have the values [1, 2,
>     4, 8, 16, 32, 64, 128, 256, 512] want to calculate a 90%
>     percentile. For this you take any number that splits the (sorted)
>     list into two lists, where one list has all elements, that are
>     smaller (or equal) to the number and one list contains all
>     elements that are bigger than the number. For this example, any
>     number between 256 and 511.99 would be a valid 90% percentile.
>     (that is of course a broad description only)
>
>     The Aggregate report currently uses a memory intensive way and
>     stores a list with all values and picks the smallest number, that
>     fits the above description. (This memory hogging behaviour should
>     be fixed and would lead to less accurate data and less OOMs or
>     slow JMeter instances)
>
>     The HTML report gives you a value that would probably be a good
>     90% percentile, if you would have more data like the one, you
>     already have by picking some value between the lower bound and the
>     upper bound of the described range (in our example something
>     between 256 and 511.999).
>
>     As your report has very few samples (21 for the biggest difference
>     in the numbers), the skew between the reported percentiles can
>     look big, but are not necessarily wrong.
>
>     Note, that if the numbers that both reports tell you are far
>     apart, that is probably a sign of having either too few samples,
>     or the samples (durations of the samples) are distributed sparsely
>     near theĀ  percentile ranges.
>
>     We have discussed in the past to use the same algorithm for both
>     components, so that you get consistent values, but there were
>     always other issues, that seemed to be more important.
>
>     Felix
>
>     Am 02.06.21 um 15:28 schrieb Deepak Chaudhari:
>>     Hi,
>>
>>     I collected JTL file during a test run and using that I'm
>>     generating HTML report and aggregate report. When I compare
>>     aggregate and HTML reports I found that 90th and 95th percentile
>>     values are wrong in HTML report.
>>     I tried to change "jmeter.reportgenerator.statistic_window" value
>>     in user.properties but still getting wrong values.
>>
>>     *Aggregate report:*
>>     image.png
>>
>>     *HTML report:*
>>     image.png
>

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