Hi Mike, Lewis et al, Having run OODT on Windows before, what I've found is that 99% of the headaches are related to how paths differ within a Cygwin (Windows) environment versus the Unix environment. I never had to modify the filemgr scripts however, only the environment variables that are referenced within it.
sh-4.1$ Error: Could not find or load main class org.apache.oodt.cas.filemgr.system.XmlRpcFileManager This error looks like the java.ext.dirs is not finding the filemgr JAR. Maybe you could try seeing if you can call up the XmlRpcFileManager jar directly and then build up to using java.ext.dirs? i.e. something like: > cd filemgr/lib > java -cp "cas-filemgr-0.7-SNAPSHOT.jar;*" > org.apache.oodt.cas.filemgr.system.XmlRpcFileManagerClient Rishi On Mar 15, 2014, at 3:10 PM, Mike Vogel wrote: To see if there is something about the what the filemgr jar file is built that is causing the failures I tried building CAS File Manager project directly as describe at: http://oodt.apache.org/components/maven/filemgr/user/basic.html on windows 7 64 bit using Cygwin. It fails in the following ways. Any suggestions? I’m going to try switching to using a CentOS virtual box but I’d like to be able to run under windows as well so I could easily integrate with some windows projects I already have working. Running ‘mvn clean install’ fails on the XMLTest, stack trace below. testDOM(org.apache.oodt.commons.util.XMLTest) Time elapsed: 0.1 sec <<< FAILURE! junit.framework.AssertionFailedError: Stringified DOM document CRC mismatch, got value = 3750466362 at junit.framework.Assert.fail(Assert.java:47) at junit.framework.Assert.assertTrue(Assert.java:20) at org.apache.oodt.commons.util.XMLTest.testDOM(XMLTest.java:62) Running ‘mvn install -DskipTests’ fails on a connection timeout to http://projects.iplantcollaborative.org. I tried it several times and will try again later tonight or tomorrow. [ERROR] Failed to execute goal on project cas-protocol-ftp: Could not resolve dependencies for project org.apache.oodt:cas-protocol-ftp:jar:0.6: Failed to collect dependencies for [org.apache.oodt:cas-protocol-api:jar:0.6 (compile), org.globus:cog-jglobus:jar:1.8.0 (compile), commons-net:commons-net:jar:1.4.0 (compile), org.apache.ftpserver:ftpserver-core:jar:1.0.5 (test), org.slf4j:slf4j-log4j12:jar:1.5.2 (test), junit:junit:jar:3.8.2 (test)]: Failed to read artifact descriptor for org.globus:cog-jglobus:jar:1.8.0: Could not transfer artifact org.globus:cog-jglobus:pom:1.8.0 from/to globus-repo (http://projects.iplantcollaborative.org/archiva/repository/internal): Connection tohttp://projects.iplantcollaborative.org refused: Connection timed out: connect -> [Help 1] From: Mike Vogel [mailto:[email protected]] Sent: Saturday, March 15, 2014 5:14 PM To: Ramirez, Paul M (398J) Cc: <[email protected]<mailto:[email protected]>>; [email protected]<mailto:[email protected]>; Verma, Rishi (398J); Sumarlidason, Arni L (398J-Affiliate) Subject: RE: radix oodt install question Resending because I wasn’t subscribed to [email protected]<mailto:[email protected]> From: Mike Vogel Sent: Saturday, March 15, 2014 4:59 PM To: 'Ramirez, Paul M (398J)' Cc: <[email protected]<mailto:[email protected]>>; [email protected]<mailto:[email protected]>; Verma, Rishi (398J); Sumarlidason, Arni L (398J-Affiliate) Subject: RE: radix oodt install question I ran the command you suggested. Just in case, I changed to use the full jdk I had in a different folder. Same problem, org.apache.oodt.cas.filemgr.system.XmlRpcFileManager is not found. I included a screen shot of the contents of C:\oodt\oodt-deploy\filemgr\lib\cas-filemgr-0.6.jar which is on the class path and contains XmlRpcFileManager.class. sh-4.1$ pwd /cygdrive/c/oodt/oodt-deploy sh-4.1$ "/cygdrive/c/Program Files/java/jdk1.7.0_51/bin/java" -Djava.ext.dirs=/cygdrive/c/oodt/oodt-deploy/filemgr/lib -classpat h /cygdrive/c/oodt/oodt-deploy/filemgr/lib -Djava.util.logging.config.file=/cygdrive/c/oodt/oodt-deploy/filemgr/etc/logging.proper ties -Dorg.apache.oodt.cas.filemgr.properties=/cygdrive/c/oodt/oodt-deploy/filemgr/etc/filemgr.properties -Djava.io.tmpdir=C:\ oodt\oodt-deploy\temp org.apache.oodt.cas.filemgr.system.XmlRpcFileManager --portNum 9000 2>&1 & [1] 8052 sh-4.1$ Error: Could not find or load main class org.apache.oodt.cas.filemgr.system.XmlRpcFileManager [1]+ Done(1) "/cygdrive/c/Program Files/java/jdk1.7.0_51/bin/java" -Djava.ext.dirs=/cygdrive/c/oodt/oodt-deploy/filemgr/lib -classpath /cygdrive/c/oodt/oodt-deploy/filemgr/lib -Djava.util.logging.config.file=/cygdrive/c/oodt/oodt-deploy/filemgr/etc/logging.properties -Dorg.apache.oodt.cas.filemgr.properties=/cygdrive/c/oodt/oodt-deploy/filemgr/etc/filemgr.properties -Djava.io.tmpdir=C:\oodt\oodt-deploy\temp org.apache.oodt.cas.filemgr.system.XmlRpcFileManager --portNum 9000 2>&1 sh-4.1$ <image001.png> From: Ramirez, Paul M (398J) [mailto:[email protected]] Sent: Saturday, March 15, 2014 2:19 PM To: Mike Vogel Cc: <[email protected]<mailto:[email protected]>>; [email protected]<mailto:[email protected]>; Verma, Rishi (398J); Sumarlidason, Arni L (398J-Affiliate) Subject: Re: radix oodt install question Mike, Adding Rishi and Arni as they both have more experience than myself running OODT in a windows environment. Looked at this a little this morning. It's hard as I don't have an Windows environment on me to troubleshoot this with but if you try running the command line below directly then it could lead to a resolution. Looks like maybe the tmpdir may be wrong too. If you capture the output when you run this and post it here we can do some further troubleshooting. /cygdrive/c/program files (x86)/java/jre7/bin/java -Djava.ext.dirs=/cygdrive/c/oodt/oodt-deploy/filemgr/lib -classpath /cygdrive/c/oodt/oodt-deploy/filemgr/lib -Djava.util.logging.config.file=/cygdrive/c/oodt/oodt-deploy/filemgr/etc/logging.properties -Dorg.apache.oodt.cas.filemgr.properties=/cygdrive/c/oodt/oodt-deploy/filemgr/etc/filemgr.properties -Djava.io.tmpdir=C:\oodt\oodt-deploy\temp org.apache.oodt.cas.filemgr.system.XmlRpcFileManager --portNum 9000 2>&1 & Thanks, Paul From: <Ramirez>, JPL <[email protected]<mailto:[email protected]>> Date: Friday, March 14, 2014 6:01 PM To: JPL <[email protected]<mailto:[email protected]>> Cc: Mike Vogel <[email protected]<mailto:[email protected]>>, "<[email protected]<mailto:[email protected]>>" <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: radix oodt install question Mike, One thing that came to mind is that on that version of radix pid file cleanup wasn't working so you'd have to go into the run directories and just delete them after you kill jobs or something doesn't start up right. This doesn't fix the main problem which of why something doesn't start up right. I'll look at that in the morning. Also maybe Rishi can answer this. --Paul Sent from my iPhone On Mar 14, 2014, at 4:33 PM, "Ramirez, Paul M (398J)" <[email protected]<mailto:[email protected]>> wrote: Mike, I'll look at this tomorrow morning and help out. No spare time at work today and then wife had plans. Actually if you could post this to OODT dev we might get others to help and if not I will still do so. --Paul Sent from my iPhone On Mar 14, 2014, at 3:37 PM, "Mike Vogel" <[email protected]<mailto:[email protected]>> wrote: Attached out file is after a stop and then a start. I’ve tried running the file manager from the command line directly and it seems like there isn’t a main in the cas-filemgr-0.6.jar file even though I see the org.apache.oodt.cas.filemgr.system.XmlRpcFileManager class in the jar file. Probably something stupid I’m doing. I’m currently trying to rebuild from source. Thanks, Mike Vogel M 908.399.7196 [email protected]<mailto:[email protected]> <oodt.out>
