Glad it worked. -b
On Mon, Apr 22, 2013 at 5:54 PM, Mehmet Belgin <mehmet.bel...@oit.gatech.edu > wrote: > Oh, I assumed that seqpig was a part of pig. > > Replacing the "pig" with "seqpig" did the trick. Looks like the args are > identical to those of the pig. > > Thank you for your responses! > > -Mehmet > > > > On Apr 22, 2013, at 5:20 PM, j.barrett Strausser wrote: > > > Looks like that loader is related to and available from : > > http://seqpig.sourceforge.net/ > > > > I don't believe the BamUdfLoader is native to pig. > > > > -b > > > > > > On Mon, Apr 22, 2013 at 5:06 PM, Mehmet Belgin < > mehmet.bel...@oit.gatech.edu > >> wrote: > > > >> Hi Everyone, > >> > >> I have absolutely no experience with Pig and limited experience with > >> hadoop, so please bear with me. We built a small hadoop cluster for > >> experimental purposes and installed pig with all listed dependencies. I > >> made sure that all of the jars are in CLASSPATH and env variables are > >> defined as docuemtned, but still getting the following error: > >> > >> 2013-04-22 16:50:08,770 [main] ERROR org.apache.pig.tools.grunt.Grunt - > >> ERROR 1070: Could not resolve BamUDFLoader using imports: [, > >> org.apache.pig.builtin., org.apache.pig.impl.builtin.] > >> > >> And this is the command we are running: > >> > >> pig -param inputfile=./bowtie_sorted.bam -param > >> outputfile=hadoop_bam.pileup -param pparallel=1 > >> ${SEQPIG_HOME}/scripts/pileup.pig > >> > >> My google search for this error or "BamUDFLoader" alone did not return > >> anything useful. Which jar is supposed to provide this function? Any > >> suggestions will be appreciated. > >> > >> Thanks a lot in advance! > >> -Mehmet > >> > >> > >> > >> > > > > > > -- > > > > > > https://github.com/bearrito > > @barrettsmash > > -- https://github.com/bearrito @barrettsmash
