I am trying to train a large dataset consisting of 8 million data points and 20 million features using SVMWithSGD. But it is failing after running for some time. I tried increasing num-partitions, driver-memory, executor-memory, driver-max-resultSize. Also I tried by reducing the size of dataset from 8 million to 25K (keeping number of features same 20 M). But after using the entire 64GB driver memory for 20 to 30 min it failed.
I'm using a cluster of 8 nodes (each with 8 cores and 64G RAM). executor-memory - 60G driver-memory - 60G num-executors - 64 And other default settings This is the error log : 15/04/20 11:51:09 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable 15/04/20 11:51:29 WARN BLAS: Failed to load implementation from: com.github.fommil.netlib.NativeSystemBLAS 15/04/20 11:51:29 WARN BLAS: Failed to load implementation from: com.github.fommil.netlib.NativeRefBLAS 15/04/20 11:56:11 WARN TransportChannelHandler: Exception in connection from xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 java.io.IOException: Connection reset by peer at sun.nio.ch.FileDispatcherImpl.read0(Native Method) at sun.nio.ch.SocketDispatcher.read(SocketDispatcher.java:39) ....... 15/04/20 11:56:11 ERROR TransportResponseHandler: Still have 7 requests outstanding when connection from xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 is closed 15/04/20 11:56:11 ERROR OneForOneBlockFetcher: Failed while starting block fetches java.io.IOException: Connection reset by peer at sun.nio.ch.FileDispatcherImpl.read0(Native Method) at sun.nio.ch.SocketDispatcher.read(SocketDispatcher.java:39) ....... 15/04/20 11:56:11 ERROR OneForOneBlockFetcher: Failed while starting block fetches java.io.IOException: Connection reset by peer at sun.nio.ch.FileDispatcherImpl.read0(Native Method) at sun.nio.ch.SocketDispatcher.read(SocketDispatcher.java:39) ........... 15/04/20 11:56:12 ERROR RetryingBlockFetcher: Exception while beginning fetch of 1 outstanding blocks java.io.IOException: Failed to connect to xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:191) at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:156) at org.apache.spark.network.netty.NettyBlockTransferService$$anon$1.createAndStart(NettyBlockTransferService.scala:78) at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:140) at org.apache.spark.network.shuffle.RetryingBlockFetcher.start(RetryingBlockFetcher.java:120) at org.apache.spark.network.netty.NettyBlockTransferService.fetchBlocks(NettyBlockTransferService.scala:87) at org.apache.spark.storage.ShuffleBlockFetcherIterator.sendRequest(ShuffleBlockFetcherIterator.scala:149) at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:290) at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:53) at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371) at org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:32) at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:39) at org.apache.spark.Aggregator.combineCombinersByKey(Aggregator.scala:91) at org.apache.spark.shuffle.hash.HashShuffleReader.read(HashShuffleReader.scala:44) at org.apache.spark.rdd.ShuffledRDD.compute(ShuffledRDD.scala:92) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277) at org.apache.spark.rdd.RDD.iterator(RDD.scala:244) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277) at org.apache.spark.rdd.RDD.iterator(RDD.scala:244) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:61) at org.apache.spark.scheduler.Task.run(Task.scala:64) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:203) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:745) Caused by: java.net.ConnectException: Connection refused: xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method) at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:739) at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:208) at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:287) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:528) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354) at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116) ... 1 more 15/04/20 11:56:15 ERROR RetryingBlockFetcher: Exception while beginning fetch of 1 outstanding blocks java.io.IOException: Failed to connect to xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:191) Caused by: java.net.ConnectException: Connection refused: xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method) at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:739) at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:208) at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:287) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:528) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354) at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116) ... 1 more 15/04/20 11:56:27 ERROR ShuffleBlockFetcherIterator: Failed to get block(s) from xxx.xxx.xxx.net:41029 java.io.IOException: Failed to connect to xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:191) at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:156) at org.apache.spark.network.netty.NettyBlockTransferService$$anon$1.createAndStart(NettyBlockTransferService.scala:78) at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:140) at org.apache.spark.network.shuffle.RetryingBlockFetcher.access$200(RetryingBlockFetcher.java:43) at org.apache.spark.network.shuffle.RetryingBlockFetcher$1.run(RetryingBlockFetcher.java:170) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:745) Caused by: java.net.ConnectException: Connection refused: xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method) at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:739) at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:208) at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:287) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:528) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354) at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116) ... 1 more 15/04/20 11:56:30 ERROR ShuffleBlockFetcherIterator: Failed to get block(s) from xxx.xxx.xxx.net:41029 java.io.IOException: Failed to connect to xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:191) at org.apache.spark.network.client.TransportClientFactory.createClient(TransportClientFactory.java:156) at org.apache.spark.network.netty.NettyBlockTransferService$$anon$1.createAndStart(NettyBlockTransferService.scala:78) at org.apache.spark.network.shuffle.RetryingBlockFetcher.fetchAllOutstanding(RetryingBlockFetcher.java:140) at org.apache.spark.network.shuffle.RetryingBlockFetcher.access$200(RetryingBlockFetcher.java:43) at org.apache.spark.network.shuffle.RetryingBlockFetcher$1.run(RetryingBlockFetcher.java:170) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:745) Caused by: java.net.ConnectException: Connection refused: xxx.xxx.xxx.net/xxx.xxx.xxx.xxx:41029 at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method) at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:739) at io.netty.channel.socket.nio.NioSocketChannel.doFinishConnect(NioSocketChannel.java:208) at io.netty.channel.nio.AbstractNioChannel$AbstractNioUnsafe.finishConnect(AbstractNioChannel.java:287) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:528) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354) at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116) ... 1 more -- View this message in context: 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