you might want to think about filing a JIRA on issues.apache.org against HADOOP here, component being fs/s3. That doesn't mean it is fixable, only known.
Every FS has its own set of forbidden characters & filenames; unix doesn't files named "."; windows doesn't allow files called COM1, ..., so hitting some filesystem rule is sometimes a problem. Here, though, you've got the file in S3, the listing finds it, but other bits of the codepath are failing -which implies that it is something in the Hadoop libs. > On 18 Aug 2015, at 08:20, Brian Stempin <[email protected]> wrote: > > Hi, > I'm running Spark on Amazon EMR (Spark 1.4.1, Hadoop 2.6.0). I'm seeing the > exception below when encountering file names that contain colons. Any idea > on how to get around this? > > scala> val files = sc.textFile("s3a://redactedbucketname/*") > > 2015-08-18 04:38:34,567 INFO [main] storage.MemoryStore > (Logging.scala:logInfo(59)) - ensureFreeSpace(242224) called with > curMem=669367, maxMem=285203496 > > 2015-08-18 04:38:34,568 INFO [main] storage.MemoryStore > (Logging.scala:logInfo(59)) - Block broadcast_3 stored as values in memory > (estimated size 236.5 KB, free 271.1 MB) > > 2015-08-18 04:38:34,663 INFO [main] storage.MemoryStore > (Logging.scala:logInfo(59)) - ensureFreeSpace(21533) called with > curMem=911591, maxMem=285203496 > > 2015-08-18 04:38:34,664 INFO [main] storage.MemoryStore > (Logging.scala:logInfo(59)) - Block broadcast_3_piece0 stored as bytes in > memory (estimated size 21.0 KB, free 271.1 MB) > > 2015-08-18 04:38:34,665 INFO [sparkDriver-akka.actor.default-dispatcher-19] > storage.BlockManagerInfo (Logging.scala:logInfo(59)) - Added > broadcast_3_piece0 in memory on 10.182.184.26:60338 (size: 21.0 KB, free: > 271.9 MB) > > 2015-08-18 04:38:34,667 INFO [main] spark.SparkContext > (Logging.scala:logInfo(59)) - Created broadcast 3 from textFile at > <console>:21 > > files: org.apache.spark.rdd.RDD[String] = MapPartitionsRDD[7] at textFile at > <console>:21 > > > scala> files.count > > 2015-08-18 04:38:37,262 INFO [main] s3a.S3AFileSystem > (S3AFileSystem.java:listStatus(533)) - List status for path: > s3a://redactedbucketname/ > > 2015-08-18 04:38:37,262 INFO [main] s3a.S3AFileSystem > (S3AFileSystem.java:getFileStatus(684)) - Getting path status for > s3a://redactedbucketname/ () > > java.lang.IllegalArgumentException: java.net.URISyntaxException: Relative > path in absolute URI: > [922-212-4438]-[119]-[1]-[2015-08-13T15:43:12.346193%5D-%5B2015-01-01T00:00:00%5D-redacted.csv > > at org.apache.hadoop.fs.Path.initialize(Path.java:206) > > at org.apache.hadoop.fs.Path.<init>(Path.java:172) > > at org.apache.hadoop.fs.Path.<init>(Path.java:94) > > at org.apache.hadoop.fs.Globber.glob(Globber.java:240) > > at org.apache.hadoop.fs.FileSystem.globStatus(FileSystem.java:1700) > > at > org.apache.hadoop.mapred.FileInputFormat.singleThreadedListStatus(FileInputFormat.java:229) > > at > org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:200) > > at > org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:279) > > at org.apache.spark.rdd.HadoopRDD.getPartitions(HadoopRDD.scala:207) > > at org.apache.spark.rdd.RDD$anonfun$partitions$2.apply(RDD.scala:219) > > at org.apache.spark.rdd.RDD$anonfun$partitions$2.apply(RDD.scala:217) > > at scala.Option.getOrElse(Option.scala:120) > > at org.apache.spark.rdd.RDD.partitions(RDD.scala:217) > > at > org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32) > > at org.apache.spark.rdd.RDD$anonfun$partitions$2.apply(RDD.scala:219) > > at org.apache.spark.rdd.RDD$anonfun$partitions$2.apply(RDD.scala:217) > > at scala.Option.getOrElse(Option.scala:120) > > at org.apache.spark.rdd.RDD.partitions(RDD.scala:217) > > at org.apache.spark.SparkContext.runJob(SparkContext.scala:1781) > > at org.apache.spark.rdd.RDD.count(RDD.scala:1099) > > at $iwC$iwC$iwC$iwC$iwC$iwC$iwC$iwC.<init>(<console>:24) > > at $iwC$iwC$iwC$iwC$iwC$iwC$iwC.<init>(<console>:29) > > at $iwC$iwC$iwC$iwC$iwC$iwC.<init>(<console>:31) > > at $iwC$iwC$iwC$iwC$iwC.<init>(<console>:33) > > at $iwC$iwC$iwC$iwC.<init>(<console>:35) > > at $iwC$iwC$iwC.<init>(<console>:37) > > at $iwC$iwC.<init>(<console>:39) > > at $iwC.<init>(<console>:41) > > at <init>(<console>:43) > > at .<init>(<console>:47) > > at .<clinit>(<console>) > > at .<init>(<console>:7) > > at .<clinit>(<console>) > > at $print(<console>) > > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > > at java.lang.reflect.Method.invoke(Method.java:606) > > at > org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065) > > at > org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338) > > at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840) > > at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871) > > at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819) > > at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857) > > at > org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902) > > at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814) > > at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:657) > > at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:665) > > at > org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$loop(SparkILoop.scala:670) > > at > org.apache.spark.repl.SparkILoop$anonfun$org$apache$spark$repl$SparkILoop$process$1.apply$mcZ$sp(SparkILoop.scala:997) > > at > org.apache.spark.repl.SparkILoop$anonfun$org$apache$spark$repl$SparkILoop$process$1.apply(SparkILoop.scala:945) > > at > org.apache.spark.repl.SparkILoop$anonfun$org$apache$spark$repl$SparkILoop$process$1.apply(SparkILoop.scala:945) > > at > scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135) > > at > org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$process(SparkILoop.scala:945) > > at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059) > > at org.apache.spark.repl.Main$.main(Main.scala:31) > > at org.apache.spark.repl.Main.main(Main.scala) > > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > > at java.lang.reflect.Method.invoke(Method.java:606) > > at > org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$runMain(SparkSubmit.scala:665) > > at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:170) > > at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:193) > > at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:112) > > at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) > > Caused by: java.net.URISyntaxException: Relative path in absolute URI: > [922-212-4438]-[119]-[1]-[2015-08-13T15:43:12.346193%5D-%5B2015-01-01T00:00:00%5D-redacted.csv > > at java.net.URI.checkPath(URI.java:1804) > > at java.net.URI.<init>(URI.java:752) > > at org.apache.hadoop.fs.Path.initialize(Path.java:203) > > ... 65 more > > > > -- > View this message in context: > http://apache-spark-user-list.1001560.n3.nabble.com/Issues-with-S3-paths-that-contain-colons-tp24320.html > Sent from the Apache Spark User List mailing list archive at Nabble.com. > > --------------------------------------------------------------------- > To unsubscribe, e-mail: [email protected] > For additional commands, e-mail: [email protected] > > --------------------------------------------------------------------- To unsubscribe, e-mail: [email protected] For additional commands, e-mail: [email protected]
