Can you apply this patch too and check the logs of Driver and worker.
diff --git
a/core/src/main/scala/org/apache/spark/scheduler/cluster/StandaloneSchedulerBackend.scala
b/core/src/main/scala/org/apache/spark/scheduler/cluster/StandaloneSchedulerBackend.scala
index b6f0ec9..ad0ebf7 100644
---
a/core/src/main/scala/org/apache/spark/scheduler/cluster/StandaloneSchedulerBackend.scala
+++
b/core/src/main/scala/org/apache/spark/scheduler/cluster/StandaloneSchedulerBackend.scala
@@ -132,7 +132,7 @@ class StandaloneSchedulerBackend(scheduler:
ClusterScheduler, actorSystem: Actor
// Remove a disconnected slave from the cluster
def removeExecutor(executorId: String, reason: String) {
if (executorActor.contains(executorId)) {
- logInfo("Executor " + executorId + " disconnected, so removing it")
+ logInfo("Executor " + executorId + " disconnected, so removing it,
reason:" + reason)
val numCores = freeCores(executorId)
actorToExecutorId -= executorActor(executorId)
addressToExecutorId -= executorAddress(executorId)
On Wed, Oct 30, 2013 at 8:18 PM, Imran Rashid <im...@quantifind.com> wrote:
> I just realized something about the failing stages -- they generally occur
> in steps like this:
>
> rdd.mapPartitions{itr =>
> val myCounters = initializeSomeDataStructure()
> itr.foreach{
> //update myCounter in here
> ...
> }
>
> myCounters.iterator.map{
> //some other transformation here ...
> }
> }
>
> that is, as a partition is processed, nothing gets output, we just
> accumulate some values. Only at the end of the partition do we output some
> accumulated values.
>
> These stages don't always fail, and generally they do succeed after the
> executor has died and a new one has started -- so I'm pretty confident its
> not a problem w/ the code. But maybe we need to add something like a
> periodic heartbeat in this kind of operation?
>
>
>
> On Wed, Oct 30, 2013 at 8:56 AM, Imran Rashid <im...@quantifind.com>wrote:
>
>> I'm gonna try turning on more akka debugging msgs as described at
>> http://akka.io/faq/
>> and
>>
>> http://doc.akka.io/docs/akka/current/scala/testing.html#Tracing_Actor_Invocations
>>
>> unfortunately that will require a patch to spark, but hopefully that will
>> give us more info to go on ...
>>
>>
>> On Wed, Oct 30, 2013 at 8:10 AM, Prashant Sharma <scrapco...@gmail.com>wrote:
>>
>>> I have things running (from scala 2.10 branch) for over 3-4 hours now
>>> without a problem and my jobs write data about the same as you suggested.
>>> My cluster size is 7 nodes and not *congested* for memory. I going to leave
>>> jobs running all night long. Meanwhile I had encourage you to try to spot
>>> the problem such that it is reproducible that can help a ton in fixing the
>>> issue.
>>>
>>> Thanks for testing and reporting your experience. I still feel there is
>>> something else wrong !. About tolerance for network connection timeouts,
>>> setting those properties should work, but I am afraid about Disassociation
>>> Event though. I will have to check this is indeed hard to reproduce bug if
>>> it is, I mean how do I simulate network delays ?
>>>
>>>
>>> On Wed, Oct 30, 2013 at 6:05 PM, Imran Rashid <im...@quantifind.com>wrote:
>>>
>>>> This is a spark-standalone setup (not mesos), on our own cluster.
>>>>
>>>> At first I thought it must be some temporary network problem too -- but
>>>> the times between receiving task completion events from an executor and
>>>> declaring it failed are really small, so I didn't think that could possibly
>>>> be it. Plus we tried increasing various akka timeouts, but that didn't
>>>> help. Or maybe there are some other spark / akka properities we should be
>>>> setting? It certainly should be resilient to such a temporary network
>>>> issue, if that is the problem.
>>>>
>>>> btw, I think I've noticed this happens most often during
>>>> ShuffleMapTasks. The tasks write out very small amounts of data (64 MB
>>>> total for the entire stage).
>>>>
>>>> thanks
>>>>
>>>> On Wed, Oct 30, 2013 at 6:47 AM, Prashant Sharma
>>>> <scrapco...@gmail.com>wrote:
>>>>
>>>>> Are you using mesos ? I admit to have not properly tested things on
>>>>> mesos though.
>>>>>
>>>>>
>>>>> On Wed, Oct 30, 2013 at 11:31 AM, Prashant Sharma <
>>>>> scrapco...@gmail.com> wrote:
>>>>>
>>>>>> Those log messages are new to the Akka 2.2 and are usually seen when
>>>>>> a node is disassociated with other by either a network failure or even
>>>>>> clean shutdown. This suggests some network issue to me, are you running
>>>>>> on
>>>>>> EC2 ? It might be a temporary thing in that case.
>>>>>>
>>>>>> I had like to have more details on the long jobs though, how long ?
>>>>>>
>>>>>>
>>>>>> On Wed, Oct 30, 2013 at 1:29 AM, Imran Rashid
>>>>>> <im...@quantifind.com>wrote:
>>>>>>
>>>>>>> We've been testing out the 2.10 branch of spark, and we're running
>>>>>>> into some issues were akka disconnects from the executors after a while.
>>>>>>> We ran some simple tests first, and all was well, so we started
>>>>>>> upgrading
>>>>>>> our whole codebase to 2.10. Everything seemed to be working, but then
>>>>>>> we
>>>>>>> noticed that when we run long jobs, and then things start failing.
>>>>>>>
>>>>>>>
>>>>>>> The first suspicious thing is that we get akka warnings about
>>>>>>> undeliverable messages sent to deadLetters:
>>>>>>>
>>>>>>> 22013-10-29 11:03:54,577 [spark-akka.actor.default-dispatcher-17]
>>>>>>> INFO akka.actor.LocalActorRef - Message
>>>>>>> [akka.remote.transport.ActorTransportAdapter$DisassociateUnderlying]
>>>>>>> from
>>>>>>> Actor[akka://spark/deadLetters] to
>>>>>>> Actor[akka://spark/system/transports/akkaprotocolmanager.tcp0/akkaProtocol-tcp%3A%2F%2Fspark%4010.10.5.81%3A46572-3#656094700]
>>>>>>> was not delivered. [4] dead letters encountered. This logging can be
>>>>>>> turned
>>>>>>> off or adjusted with configuration settings 'akka.log-dead-letters' and
>>>>>>> 'akka.log-dead-letters-during-shutdown'.
>>>>>>>
>>>>>>> 2013-10-29 11:03:54,579 [spark-akka.actor.default-dispatcher-19]
>>>>>>> INFO akka.actor.LocalActorRef - Message
>>>>>>> [akka.remote.transport.AssociationHandle$Disassociated] from
>>>>>>> Actor[akka://spark/deadLetters] to
>>>>>>> Actor[akka://spark/system/transports/akkaprotocolmanager.tcp0/akkaProtocol-tcp%3A%2F%2Fspark%4010.10.5.81%3A46572-3#656094700]
>>>>>>> was not delivered. [5] dead letters encountered. This logging can be
>>>>>>> turned
>>>>>>> off or adjusted with configuration settings 'akka.log-dead-letters' and
>>>>>>> 'akka.log-dead-letters-during-shutdown'.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Generally within a few seconds after the first such message, there
>>>>>>> are a bunch more, and then the executor is marked as failed, and a new
>>>>>>> one
>>>>>>> is started:
>>>>>>>
>>>>>>> 2013-10-29 11:03:58,775 [spark-akka.actor.default-dispatcher-3]
>>>>>>> INFO akka.actor.LocalActorRef - Message
>>>>>>> [akka.remote.transport.ActorTransportAdapter$DisassociateUnderlying]
>>>>>>> from
>>>>>>> Actor[akka://spark/deadLetters] to
>>>>>>> Actor[akka://spark/system/transports/akkaprotocolmanager.tcp0/akkaProtocol-tcp%3A%2F%2FsparkExecutor%
>>>>>>> 40dhd2.quantifind.com%3A45794-6#-890135716] was not delivered. [10]
>>>>>>> dead letters encountered, no more dead letters will be logged. This
>>>>>>> logging
>>>>>>> can be turned off or adjusted with configuration settings
>>>>>>> 'akka.log-dead-letters' and 'akka.log-dead-letters-during-shutdown'.
>>>>>>>
>>>>>>> 2013-10-29 11:03:58,778 [spark-akka.actor.default-dispatcher-17]
>>>>>>> INFO org.apache.spark.deploy.client.Client$ClientActor - Executor
>>>>>>> updated:
>>>>>>> app-20131029110000-0000/1 is now FAILED (Command exited with code 1)
>>>>>>>
>>>>>>> 2013-10-29 11:03:58,784 [spark-akka.actor.default-dispatcher-17]
>>>>>>> INFO org.apache.spark.deploy.client.Client$ClientActor - Executor
>>>>>>> added:
>>>>>>> app-20131029110000-0000/2 on
>>>>>>> worker-20131029105824-dhd2.quantifind.com-51544 (
>>>>>>> dhd2.quantifind.com:51544) with 24 cores
>>>>>>>
>>>>>>> 2013-10-29 11:03:58,784 [spark-akka.actor.default-dispatcher-18]
>>>>>>> ERROR akka.remote.EndpointWriter - AssociationError [akka.tcp://
>>>>>>> sp...@ddd0.quantifind.com:43068] -> [akka.tcp://
>>>>>>> sparkexecu...@dhd2.quantifind.com:45794]: Error [Association failed
>>>>>>> with [akka.tcp://sparkexecu...@dhd2.quantifind.com:45794]] [
>>>>>>> akka.remote.EndpointAssociationException: Association failed with
>>>>>>> [akka.tcp://sparkexecu...@dhd2.quantifind.com:45794]
>>>>>>> Caused by:
>>>>>>> akka.remote.transport.netty.NettyTransport$$anonfun$associate$1$$anon$2:
>>>>>>> Connection refused: dhd2.quantifind.com/10.10.5.64:45794]
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Looking in the logs of the failed executor, there are some similar
>>>>>>> messages about undeliverable messages, but I don't see any reason:
>>>>>>>
>>>>>>> 13/10/29 11:03:52 INFO executor.Executor: Finished task ID 943
>>>>>>>
>>>>>>> 13/10/29 11:03:53 INFO actor.LocalActorRef: Message
>>>>>>> [akka.actor.FSM$Timer] from Actor[akka://sparkExecutor/deadLetters] to
>>>>>>> Actor[akka://sparkExecutor/system/transports/akkaprotocolmanager.tcp0/akkaProtocol-tcp%3A%2F%2Fspark%
>>>>>>> 40ddd0.quantifind.com%3A43068-1#772172548] was not delivered. [1]
>>>>>>> dead letters encountered. This logging can be turned off or adjusted
>>>>>>> with
>>>>>>> configuration settings 'akka.log-dead-letters' and
>>>>>>> 'akka.log-dead-letters-during-shutdown'.
>>>>>>>
>>>>>>> 13/10/29 11:03:53 INFO actor.LocalActorRef: Message
>>>>>>> [akka.remote.transport.AssociationHandle$Disassociated] from
>>>>>>> Actor[akka://sparkExecutor/deadLetters] to
>>>>>>> Actor[akka://sparkExecutor/system/transports/akkaprotocolmanager.tcp0/akkaProtocol-tcp%3A%2F%2Fspark%
>>>>>>> 40ddd0.quantifind.com%3A43068-1#772172548] was not delivered. [2]
>>>>>>> dead letters encountered. This logging can be turned off or adjusted
>>>>>>> with
>>>>>>> configuration settings 'akka.log-dead-letters' and
>>>>>>> 'akka.log-dead-letters-during-shutdown'.
>>>>>>>
>>>>>>> 13/10/29 11:03:53 INFO actor.LocalActorRef: Message
>>>>>>> [akka.remote.transport.AssociationHandle$Disassociated] from
>>>>>>> Actor[akka://sparkExecutor/deadLetters] to
>>>>>>> Actor[akka://sparkExecutor/system/transports/akkaprotocolmanager.tcp0/akkaProtocol-tcp%3A%2F%2Fspark%
>>>>>>> 40ddd0.quantifind.com%3A43068-1#772172548] was not delivered. [3]
>>>>>>> dead letters encountered. This logging can be turned off or adjusted
>>>>>>> with
>>>>>>> configuration settings 'akka.log-dead-letters' and
>>>>>>> 'akka.log-dead-letters-during-shutdown'.
>>>>>>>
>>>>>>> 13/10/29 11:03:53 ERROR executor.StandaloneExecutorBackend: Driver
>>>>>>> terminated or disconnected! Shutting down.
>>>>>>>
>>>>>>> 13/10/29 11:03:53 INFO actor.LocalActorRef: Message
>>>>>>> [akka.remote.transport.ActorTransportAdapter$DisassociateUnderlying]
>>>>>>> from
>>>>>>> Actor[akka://sparkExecutor/deadLetters] to
>>>>>>> Actor[akka://sparkExecutor/system/transports/akkaprotocolmanager.tcp0/akkaProtocol-tcp%3A%2F%2Fspark%
>>>>>>> 40ddd0.quantifind.com%3A43068-1#772172548] was not delivered. [4]
>>>>>>> dead letters encountered. This logging can be turned off or adjusted
>>>>>>> with
>>>>>>> configuration settings 'akka.log-dead-letters' and
>>>>>>> 'akka.log-dead-letters-during-shutdown'.
>>>>>>>
>>>>>>>
>>>>>>> After this happens, spark does launch a new executor successfully,
>>>>>>> and continue the job. Sometimes, the job just continues happily and
>>>>>>> there
>>>>>>> aren't any other problems. However, that executor may have to run a
>>>>>>> bunch
>>>>>>> of steps to re-compute some cached RDDs -- and during that time, another
>>>>>>> executor may crash similarly, and then we end up in a never ending
>>>>>>> loop, of
>>>>>>> one executor crashing, then trying to reload data, while the others sit
>>>>>>> around.
>>>>>>>
>>>>>>> I have no idea what is triggering this behavior -- there isn't any
>>>>>>> particular point in the job that it regularly occurs at. Certain steps
>>>>>>> seem more prone to this, but there isn't any step which regularly causes
>>>>>>> the problem. In a long pipeline of steps, though, that loop becomes
>>>>>>> very
>>>>>>> likely. I don't think its a timeout issue -- the initial failing
>>>>>>> executors
>>>>>>> can be actively completing stages just seconds before this failure
>>>>>>> happens. We did try adjusting some of the spark / akka timeouts:
>>>>>>>
>>>>>>> -Dspark.storage.blockManagerHeartBeatMs=300000
>>>>>>> -Dspark.akka.frameSize=150
>>>>>>> -Dspark.akka.timeout=120
>>>>>>> -Dspark.akka.askTimeout=30
>>>>>>> -Dspark.akka.logLifecycleEvents=true
>>>>>>>
>>>>>>> but those settings didn't seem to help the problem at all. I figure
>>>>>>> it must be some configuration with the new version of akka that we're
>>>>>>> missing, but we haven't found anything. Any ideas?
>>>>>>>
>>>>>>> our code works fine w/ the 0.8.0 release on scala 2.9.3. The
>>>>>>> failures occur on the tip of the scala-2.10 branch (5429d62d)
>>>>>>>
>>>>>>> thanks,
>>>>>>> Imran
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> s
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> s
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> s
>>>
>>
>>
>
--
s
