Hi Heejoon, Are you using 0.16 master or 0.15 branch ?
Thanks.. Chathuri On Sun, Nov 1, 2015 at 5:57 PM, Shameera Rathnayaka <[email protected]> wrote: > Hi Heejoon, > > are you getting this continuously?, I had a quick look at the exception > lines and I couldn't think a scenario where this kind of exceptions can > occur from gfac side? I didn't go through registry side let me have a look > there too. > > Thanks, > Shameera. > > > On Sat, Oct 31, 2015 at 2:39 AM Heejoon Chae <[email protected]> > wrote: > >> That process also gives creating job descriptor error as following, >> >> [ERROR] expId: testtest12_37cc9f7b-d3e4-48cc-aa5a-032401485cd9, >> processId: PROCESS_52bb3e9f-1cdf-405e-bf2b-dce00369f478, taskId: >> TASK_0762e150-08e0-4576-819f-85a95e3a5a4a type: JOB_SUBMISSION,:- Job >> submission task failed, reason: Error occurred while creating job descriptor >> >> I put 'sbatch' for SUBMISSON, 'squeue' for JOB_MONITORING, and scancel >> for 'DELETION' at Job Submission Interfaces section >> >> Thank you, >> Heejoon. >> >> On Fri, Oct 30, 2015 at 9:53 AM, Heejoon Chae <[email protected]> >> wrote: >> >>> Hi, >>> >>> I have succeeded to submit test 'echo' job through PGA's Slurm sbatch >>> interface running both on locally installed PGA and Airavata server. >>> >>> Now I can see that the job is correctly queued and the echo script >>> successfully generates result. >>> >>> However, on the Airavata server side, I got several errors related with >>> 'Data type '<UNKNOWN>' is not supported' and eventually got '[ERROR] Error >>> while getting experiment info' >>> >>> Following is part of errors related with the data type ''<UNKNOWN>'. >>> >>> >>> **************************************************************************************************** >>> [ERROR] Error occurred while creating job descriptor >>> org.apache.airavata.gfac.core.GFacException: Error persisting job >>> statusError while adding JOB_STATUS >>> at >>> org.apache.airavata.gfac.core.GFacUtils.saveJobStatus(GFacUtils.java:262) >>> at >>> org.apache.airavata.gfac.impl.task.SSHJobSubmissionTask.execute(SSHJobSubmissionTask.java:91) >>> at >>> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:522) >>> at >>> org.apache.airavata.gfac.impl.GFacEngineImpl.executeJobSubmission(GFacEngineImpl.java:207) >>> at >>> org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:180) >>> at >>> org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:188) >>> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:95) >>> at >>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) >>> at >>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) >>> at java.lang.Thread.run(Thread.java:745) >>> Caused by: org.apache.airavata.registry.cpi.RegistryException: Error >>> while adding JOB_STATUS >>> at >>> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentCatalogImpl.add(ExperimentCatalogImpl.java:189) >>> at >>> org.apache.airavata.gfac.core.GFacUtils.saveJobStatus(GFacUtils.java:251) >>> ... 9 more >>> Caused by: org.apache.airavata.registry.cpi.RegistryException: >>> org.apache.airavata.registry.cpi.RegistryException: >>> <openjpa-2.2.0-r422266:1244990 fatal general error> >>> org.apache.openjpa.persistence.PersistenceException: dataType '<UNKNOWN>' >>> is not supported. >>> at >>> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentRegistry.addJobStatus(ExperimentRegistry.java:557) >>> at >>> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentCatalogImpl.add(ExperimentCatalogImpl.java:182) >>> ... 10 more >>> >>> ******************************************************************************************************** >>> >>> Any suggestions? >>> >>> Thank you, >>> Heejoon. >>> >> >> -- > Shameera Rathnayaka >
