Hi Heejoon, I hope you are using java 1.8.
Thanks.. Chathuri On Mon, Dec 21, 2015 at 7:08 PM, Heejoon Chae <[email protected]> wrote: > Hi, Supun, > > Thank you for fixing that. I updated and do mvn clean install. > I got some errors like, > > INFO] BUILD FAILURE > [INFO] > ------------------------------------------------------------------------ > [INFO] Total time: 7.754s > [INFO] Finished at: Tue Dec 22 09:05:21 KST 2015 > [INFO] Final Memory: 36M/1931M > [INFO] > ------------------------------------------------------------------------ > [ERROR] Failed to execute goal > org.apache.maven.plugins:maven-compiler-plugin:3.1:compile > (default-compile) on project airavata-data-models: Fatal error compiling: > invalid target release: 1.8 -> [Help 1] > [ERROR] > [ERROR] To see the full stack trace of the errors, re-run Maven with the > -e switch. > [ERROR] Re-run Maven using the -X switch to enable full debug logging. > [ERROR] > [ERROR] For more information about the errors and possible solutions, > please read the following articles: > [ERROR] [Help 1] > http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException > [ERROR] > [ERROR] After correcting the problems, you can resume the build with the > command > [ERROR] mvn <goals> -rf :airavata-data-models > > Thanks, > Heejoon. > > On Tue, Dec 22, 2015 at 12:35 AM, Supun Nakandala < > [email protected]> wrote: > >> Hi Heejoon, >> >> There was an issue in the pom files and I fixed it now. Can you check >> whether your build is working now >> >> On Sun, Dec 20, 2015 at 7:52 PM, Heejoon Chae <[email protected]> >> wrote: >> >>> I got following as well, >>> >>> [INFO] Scanning for projects... >>> [ERROR] The build could not read 2 projects -> [Help 1] >>> [ERROR] >>> [ERROR] The project org.apache.airavata:data-manager-cpi:0.16-SNAPSHOT >>> (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-cpi/pom.xml) >>> has 1 error >>> [ERROR] Non-resolvable parent POM: Could not find artifact >>> org.apache.airavata:airavata:pom:0.16-SNAPSHOT and 'parent.relativePath' >>> points at wrong local POM @ line 5, column 13 -> [Help 2] >>> [ERROR] >>> [ERROR] The project >>> org.apache.airavata:data-manager-core:0.16-SNAPSHOT >>> (/data/project/mcpg/airavata/test/airavata/modules/data-manager/data-manager-core/pom.xml) >>> has 1 error >>> [ERROR] Non-resolvable parent POM: Could not find artifact >>> org.apache.airavata:airavata:pom:0.16-SNAPSHOT and 'parent.relativePath' >>> points at wrong local POM @ line 5, column 13 -> [Help 2] >>> [ERROR] >>> [ERROR] To see the full stack trace of the errors, re-run Maven with the >>> -e switch. >>> [ERROR] Re-run Maven using the -X switch to enable full debug logging. >>> [ERROR] >>> [ERROR] For more information about the errors and possible solutions, >>> please read the following articles: >>> [ERROR] [Help 1] >>> http://cwiki.apache.org/confluence/display/MAVEN/ProjectBuildingException >>> [ERROR] [Help 2] >>> http://cwiki.apache.org/confluence/display/MAVEN/UnresolvableModelException >>> >>> Thanks, >>> Heejoon. >>> >>> On Mon, Dec 21, 2015 at 9:48 AM, Chathuri Wimalasena < >>> [email protected]> wrote: >>> >>>> Instead of building only credential store module, could you build from >>>> airavata source root. Credential store module depends on >>>> airavata-server-configuration >>>> and other jars. That should resolve your issue.. >>>> >>>> Thanks. >>>> Chathuri >>>> >>>> On Sun, Dec 20, 2015 at 7:45 PM, Heejoon Chae <[email protected]> >>>> wrote: >>>> >>>>> Hi, Chathuri, >>>>> >>>>> Thank you for the explanation. >>>>> >>>>> I cloned the git and tried to compile credential-store with 'mvn clean >>>>> install -Dmaven.test.skip=true' with mvn 3.0 and java 8 but got following >>>>> errors. >>>>> >>>>> >>>>> >>>>> ############################################################################################################### >>>>> Downloaded: >>>>> http://repo1.maven.org/maven2/org/apache/derby/derbyclient/10.11.1.1/derbyclient-10.11.1.1.jar >>>>> (571 KB at 2.8 KB/sec) >>>>> [INFO] >>>>> ------------------------------------------------------------------------ >>>>> [INFO] BUILD FAILURE >>>>> [INFO] >>>>> ------------------------------------------------------------------------ >>>>> [INFO] Total time: 3:53.576s >>>>> [INFO] Finished at: Mon Dec 21 09:38:34 KST 2015 >>>>> [INFO] Final Memory: 11M/1931M >>>>> [INFO] >>>>> ------------------------------------------------------------------------ >>>>> [ERROR] Failed to execute goal on project airavata-credential-store: >>>>> Could not resolve dependencies for project >>>>> org.apache.airavata:airavata-credential-store:jar:0.16-SNAPSHOT: The >>>>> following artifacts could not be resolved: >>>>> org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT, >>>>> org.apache.airavata:airavata-server-configuration:jar:0.16-SNAPSHOT, >>>>> org.apache.airavata:airavata-commons:jar:0.16-SNAPSHOT: Could not find >>>>> artifact >>>>> org.apache.airavata:airavata-credential-store-stubs:jar:0.16-SNAPSHOT in >>>>> apache.snapshots (http://repository.apache.org/snapshots) -> [Help 1] >>>>> [ERROR] >>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with >>>>> the -e switch. >>>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging. >>>>> [ERROR] >>>>> [ERROR] For more information about the errors and possible solutions, >>>>> please read the following articles: >>>>> [ERROR] [Help 1] >>>>> http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException >>>>> >>>>> ############################################################################################################### >>>>> >>>>> Any suggestion? >>>>> >>>>> Thanks, >>>>> Heejoon. >>>>> >>>>> On Fri, Dec 18, 2015 at 9:29 PM, Chathuri Wimalasena < >>>>> [email protected]> wrote: >>>>> >>>>>> Hi Heejoon, >>>>>> >>>>>> You need to set up a valid credential store token in the credential >>>>>> store (experiment-catalog database has tables related to credential >>>>>> store). >>>>>> Same credential store token needs to be set in gateway profiles. This >>>>>> token >>>>>> is used when airavata ssh to resource, input staging and all the remote >>>>>> connections with the resource. Credential store token is the identifier >>>>>> for >>>>>> SSH credential object which contains valid SSH keys. Refer this code >>>>>> https://github.com/apache/airavata/blob/master/modules/credential-store/credential-store-service/src/test/java/org/apache/airavata/credential/store/store/impl/db/SSHCredentialTest.java. >>>>>> There are API methods to generate SSH keys as well. You can use any of >>>>>> the >>>>>> two methods. >>>>>> >>>>>> Thanks.. >>>>>> Chathuri >>>>>> >>>>>> >>>>>> >>>>>> On Fri, Dec 18, 2015 at 12:02 AM, Heejoon Chae < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> Hi, Suresh, >>>>>>> >>>>>>> Thank you for the help. It correctly parses the email. >>>>>>> >>>>>>> Now I have another error caused by 'credential token' as below, >>>>>>> >>>>>>> ERROR] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: >>>>>>> PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8, taskId: >>>>>>> TASK_fc9dd43b-f0ea-4e6c-bd92-c5daa698257b type: DATA_STAGING,:- output >>>>>>> staging failed, reason: Provided credential store token is not valid. >>>>>>> Please provide the correct credential store token >>>>>>> [INFO] expId: ttt_d0a8ca90-46b3-4225-add7-c29207130fc8, processId: >>>>>>> PROCESS_273f058f-a0bc-400b-9a82-5d71246c8fa8 :- Process status changed >>>>>>> FAILED -> FAILED >>>>>>> [INFO] Publishing status to rabbitmq... >>>>>>> [ERROR] GFac Worker throws an exception >>>>>>> org.apache.airavata.gfac.core.GFacException: Error while staging >>>>>>> output data >>>>>>> at >>>>>>> org.apache.airavata.gfac.impl.GFacEngineImpl.outputDataStaging(GFacEngineImpl.java:478) >>>>>>> at >>>>>>> org.apache.airavata.gfac.impl.GFacEngineImpl.runProcessOutflow(GFacEngineImpl.java:393) >>>>>>> at >>>>>>> org.apache.airavata.gfac.impl.GFacWorker.runProcessOutflow(GFacWorker.java:172) >>>>>>> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:105) >>>>>>> at >>>>>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) >>>>>>> at >>>>>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) >>>>>>> at java.lang.Thread.run(Thread.java:745) >>>>>>> >>>>>>> I actually set 'false' for storing credential in the >>>>>>> 'airavata-server.properties' file as bellow >>>>>>> >>>>>>> start.credential.store=false >>>>>>> >>>>>>> but it seems still they are active. >>>>>>> >>>>>>> Thank you, >>>>>>> Heejoon. >>>>>>> >>>>>>> On Fri, Dec 18, 2015 at 12:42 AM, Suresh Marru <[email protected]> >>>>>>> wrote: >>>>>>> >>>>>>>> Hi Heejoon, >>>>>>>> >>>>>>>> You will need to configure your email within gfac-config.yaml (you >>>>>>>> will find it in the bin directory). >>>>>>>> >>>>>>>> If you can add your email to: >>>>>>>> >>>>>>>> - jobManagerType: SLURM >>>>>>>> commandOutputParser: >>>>>>>> org.apache.airavata.gfac.impl.job.SlurmOutputParser >>>>>>>> emailParser: >>>>>>>> org.apache.airavata.gfac.monitor.email.parser.SLURMEmailParser >>>>>>>> resourceEmailAddresses: >>>>>>>> - SDSC Admin <[email protected]> # comet >>>>>>>> - [email protected] # stampede >>>>>>>> - [email protected] >>>>>>>> >>>>>>>> >>>>>>>> Thanks, >>>>>>>> Suresh >>>>>>>> >>>>>>>> > On Dec 16, 2015, at 6:33 PM, Heejoon Chae <[email protected]> >>>>>>>> wrote: >>>>>>>> > >>>>>>>> > Hi, Suresh, >>>>>>>> > >>>>>>>> > I am using one month old version of PGA and Airavata server. Both >>>>>>>> were recent version at that time. >>>>>>>> > >>>>>>>> > apache-airavata-server-0.16-SNAPSHOT >>>>>>>> > >>>>>>>> > Thank you, >>>>>>>> > Heejoon. >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>> > On Thu, Dec 17, 2015 at 8:28 AM, Suresh Marru <[email protected]> >>>>>>>> wrote: >>>>>>>> > Hi Heejoon, >>>>>>>> > >>>>>>>> > Are you using Airavata 0.15 or 0.16 for this purpose? >>>>>>>> > >>>>>>>> > Suresh >>>>>>>> > >>>>>>>> >> On Dec 16, 2015, at 5:38 PM, Heejoon Chae < >>>>>>>> [email protected]> wrote: >>>>>>>> >> >>>>>>>> >> Hi, >>>>>>>> >> >>>>>>>> >> I have succeeded run job with SLURM. >>>>>>>> >> >>>>>>>> >> Now, the job monitoring through email causes some errors as >>>>>>>> bellow. >>>>>>>> >> >>>>>>>> >> It seems the Airavata server correctly log in the email account >>>>>>>> and bring email list, but it could not parse it correctly. >>>>>>>> >> >>>>>>>> >> >>>>>>>> ################################################################################# >>>>>>>> >> [ERROR] [EJM]: Error parsing email message >>>>>>>> =====================================> >>>>>>>> >> org.apache.airavata.common.exception.AiravataException: [EJM]: >>>>>>>> Couldn't identify Resource job manager type from address >>>>>>>> [email protected] >>>>>>>> >> at >>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.getJobMonitorType(EmailBasedMonitor.java:160) >>>>>>>> >> at >>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.parse(EmailBasedMonitor.java:144) >>>>>>>> >> at >>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.processMessages(EmailBasedMonitor.java:239) >>>>>>>> >> at >>>>>>>> org.apache.airavata.gfac.monitor.email.EmailBasedMonitor.run(EmailBasedMonitor.java:208) >>>>>>>> >> at java.lang.Thread.run(Thread.java:745) >>>>>>>> >> [ERROR] FROM: [email protected] >>>>>>>> >> [ERROR] TO: [email protected] >>>>>>>> >> [ERROR] SUBJECT: SLURM Job_id=116 Name=A1514598207 Ended, Run >>>>>>>> time 00:00:01, COMPLETED, ExitCode 0 >>>>>>>> >> >>>>>>>> ################################################################################# >>>>>>>> >> >>>>>>>> >> Thank you, >>>>>>>> >> Heejoon. >>>>>>>> > >>>>>>>> > >>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> >> >> -- >> Thank you >> Supun Nakandala >> Dept. Computer Science and Engineering >> University of Moratuwa >> > >
