Hi Jorge,
the patch is now available, please svn update your code, followed by ant.
You would need to start from icgc3 xml again and add your dataset.
Let us know how you get on with this,
thanks for your patience,
Syed
On 09/02/2011 22:59, Syed Haider wrote:
Hi Jorge,
We have managed to fix this and the patch should become available tomorrow.
Best,
Syed
On 09/02/2011 10:46, Jorge Zamora wrote:
Hello,
I'm experiencing that queries in the Quick Interface work but when I
query using the other two interfaces the query seems to run forever.
This happens when in query my local mart but not when I use other ICGC
marts.
This a example of one of the queries that never finish:
<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE Query><Query client=""
processor="TSV" limit="-1" header="1"><Dataset name="snp_cnioCLL"
config="snp_3_1_1"><Attribute name="cancertype"/><Attribute
name="chromosome"/><Attribute
name="simple_somatic_mutation__dm_mutation_id"/><Attribute
name="donor_id"/></Dataset></Query>
anybody experiencing something similar? I'm using biomart 0.8 rc4
Thanks
Jorge
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