Dear Jonathan, I'm using Biomart 0.8 RC 6, I've changed the External URL prefix to www.ensembl.org and now it works.
Thank you very much for your help, -- Isaac Cano Bioinformatics Linkcare Health Services SL C/Villarroel 170 08036 - Barcelona Tel.: (+34)932 275 400, ext. 4182\4523 Mobile: (+34) 666 186 748 Fax: (+34) 932 275 455 [email protected] 2011/8/4 Jonathan Guberman <[email protected]> > In some cases, MartConfigurator is unable to access the information about > what host a URL should point to. This is because of a shortcoming in the way > the information is shared from 0.7, and there is no workaround. In these > cases MartConfigurator simply uses the host to which it is connecting, in > this case www.biomart.org. However, in this case the link should be > pointing to www.ensembl.org. In order to fix it you'll have to change the > host manually. Depending on what version of BioMart you're using, there > might be a single pseudoattribute called "External URL prefix" that you can > edit to change all of the URLs; in older versions, you might need to change > each URL manually. > > *Jonathan Guberman, PhD* > Application Programmer > * > **Ontario Institute for Cancer Research** > *MaRS Centre, ****South** **Tower**** > ****101 College Street, Suite 800**** > ****Toronto**, **Ontario**, **Canada** **M5G 0A3**** > > Tel: 647-260-7818 > Toll-free: 1-866-678-6427 > www.oicr.on.ca > > On 2011-08-04, at 7:22 AM, Isaac cano wrote: > > Dear BioMart users, > > I've imported the Ensembl Genes mart (from the biomart repository) into my > configuration and when I click for example on the Ensembl Gene Id to go to > the Ensembl report I'm linked to a Not Found web page. For example, the > Ensembl gene Id ENSG00000000003 is linked to > http://www.biomart.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000000003 but > I get the following 404 error: > > Not Found > The requested URL /Homo_sapiens/Gene/Summary was not found on this server. > > Do you also have this problem? > > Thanks, > > -- > Isaac Cano > Bioinformatics > Linkcare Health Services SL > C/Villarroel 170 > 08036 - Barcelona > Tel.: (+34)932 275 400, ext. 4182\4523 > Mobile: (+34) 666 186 748 > Fax: (+34) 932 275 455 > [email protected] > > <ATT00002..txt> > > >
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