Hi Gillian,
This is a known bug in the configuration of these filters and will be
rectified for release 65 due out in November.
See here for more information:
http://www.ensembl.info/contact-us/known-bugs/
I have fixed the bug on an internal test website and am happy to run
your query for you and forward the results. Apologies for an
inconvenience.
Regards
Rhoda
On 12 Oct 2011, at 15:29, Dalgliesh, Gillian wrote:
Hi there,
I have been trying to extract data using a list of NM_ IDs and get
the following error even if only typing in the single example
identifier (NM_001195597).
Is this something you could help with?
Serious Error: Error during query execution: Table
'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist
ERROR: caught BioMart::Exception::Database: Error during query
execution: Table 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist
If you repeatedly get directed to this error page, there may be a
problem with your current session parameters. To clear your session
and start with a clean slate, please click the New button below.
Stacktrace:
Exception::Class::Base::throw /ensemblweb/wwwmart/www_64/biomart-
perl/lib/BioMart/Dataset/TableSet.pm:241
BioMart::Dataset::TableSet::_fillAttributeTableWith /ensemblweb/
wwwmart/www_64/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124
BioMart::Dataset::TableSet::_getResultTable /ensemblweb/wwwmart/
www_64/biomart-perl/lib/BioMart/DatasetI.pm:1170
BioMart::DatasetI::getResultTable /ensemblweb/wwwmart/www_64/biomart-
perl/lib/BioMart/QueryRunner.pm:472
BioMart::QueryRunner::_processPath /ensemblweb/wwwmart/www_64/
biomart-perl/lib/BioMart/QueryRunner.pm:374
BioMart::QueryRunner::_getResultTable /ensemblweb/wwwmart/www_64/
biomart-perl/lib/BioMart/QueryRunner.pm:194
BioMart::QueryRunner::execute /ensemblweb/wwwmart/www_64/biomart-
perl/lib/BioMart/Web.pm:2464
(eval) /ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/Web.pm:2216
BioMart::Web::handle_request /ensemblweb/wwwmart/www_64/biomart-perl/
cgi-bin/martview:100
(eval) /ensemblweb/wwwmart/www_64/biomart-perl/cgi-bin/martview:99
ModPerl
::ROOT
::ModPerl
::Registry
::ensemblweb_wwwmart_www_64_biomart_2dperl_cgi_2dbin_martview
::handler /localsw/lib/perl5/site_perl/5.8.9/x86_64-linux-thread-
multi/ModPerl/RegistryCooker.pm:204
(eval) /localsw/lib/perl5/site_perl/5.8.9/x86_64-linux-thread-multi/
ModPerl/RegistryCooker.pm:204
ModPerl::RegistryCooker::run /localsw/lib/perl5/site_perl/5.8.9/
x86_64-linux-thread-multi/ModPerl/RegistryCooker.pm:170
ModPerl::RegistryCooker::default_handler /localsw/lib/perl5/
site_perl/5.8.9/x86_64-linux-thread-multi/ModPerl/Registry.pm:31
ModPerl::Registry::handler -e:0
(eval) -e:0
Thanks,
Gillian
Gillian L. Dalgliesh
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PHB | Genetics
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Rhoda Kinsella Ph.D.
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