Hi Mark, this sounds like a more hard core MEditor problem so i am cc'ing more knowledgable guys: Damian and Syed in case they have some ideas how to resolve it
a On Fri, Nov 4, 2011 at 1:02 PM, Mark McDowall <[email protected]> wrote: > Hi Arek, > > I resolved one problem with the display of GO and it was due to not having > the Ontology mart loaded. > > My problem is now just with the other ontologies in the mart. > > I am able to generate templates and export them, based on the GO template > in the marteditor. The first export is theoretically fine, but the > accession boxes do not show in that same way as they now do for GO. > > If I reopen the template to try and alter something exporting the template > causes the marteditor to fail with a segmentation fault. Sometimes that > change that was made before exporting has remained, other times not, but > either way it is still not possible to view the text boxes or search with > xml on the accession for other ontologies. > > Regards, > > Mark > > > > > On 04/11/11 15:19, Arek Kasprzyk wrote: > >> Hi Mark, >> some basic stuff first. Did you check that these filters are not set to >> hidden? >> >> a >> >> >> On Fri, Nov 4, 2011 at 7:20 AM, Mark McDowall <[email protected]<mailto: >> [email protected]>> wrote: >> >> Hi Guys, >> >> I am trying to get a BioMart service up and running. I have >> managed to get the database to build, but I have now run into the >> wall of martview. >> >> Getting the webserver up and running seems to be ok, but it is >> getting the filters to display that I am having trouble with. >> Using the marteditor programme, I can get the drop down lists to >> display, but sections where I want then to search an ontology with >> the ID or the name of the term do not get displayed on the >> website. I thought that this was just a display problem so I >> tried posting XML queries, but they too also fail saying that the >> filter name is unrecognised. >> >> Would anyone know where to go from here? >> >> I am running BioMart 0.7. >> >> Thank you, >> >> Mark >> >> -- Mark McDowall Ensembl Genomes Bioinformatician >> EMBL-EBI Tel: +44-(0)1223-494589 >> <tel:%2B44-%280%291223-494589> >> >> Wellcome Trust Genome Campus >> Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/ >> >> ______________________________**_________________ >> Users mailing list >> [email protected] <mailto:[email protected]> >> >> https://lists.biomart.org/**mailman/listinfo/users<https://lists.biomart.org/mailman/listinfo/users> >> >> >> > > -- > Mark McDowall Ensembl Genomes Bioinformatician > EMBL-EBI Tel: +44-(0)1223-494589 > Wellcome Trust Genome Campus > Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/ > >
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