Hi Jerome,
the ?query request wont accept addition params. A good way to instruct
your Processor to do something dynamic:
1- in the Processor file (eg. TSV.java) retrieve some params from local
variables or file
2- pass in an additional attribtue in query that is mapped against a
database column which contains this dynamic information. And when the
data is returned in the Processor, use these values to carry out your
desired operations.
HTH,
Syed
On 22/12/2011 10:16, Mariette wrote:
Hi everyone,
I want my plugin to run some basic command, to do so I implemented a processor.
However I cannot figure out
how I can catch up parameters I send to the processor.
As example:
the request would be:
http://localhost:9000/martservice/results?query=<!DOCTYPE Query><Query client="webbrowser" processor="MyProcessor" limit="-1"
header="0"><Dataset name="mart_db" config="mart_config"><Attribute name="mart__contig__main__dna"/></Dataset></Query>
MyProcessor write the dna value in fasta format and run a command that will
format the data to be vizualised into biomart. However, I'd like to provide
some other parameters to MyProcessor. I'd like to add some params:
http://localhost:9000/martservice/results?test=test_value&query=<!DOCTYPE Query><Query client="webbrowser" processor="MyProcessor" limit="-1"
header="0"><Dataset name="mart_db" config="mart_config"><Attribute name="mart__contig__main__dna"/></Dataset></Query>
and catch the test value within my processor. How can I do so ?
Maybe I shouldn't use a processor, there is any other way to compute some
calculation on the server side ?
thanks for your answer,
Jerome
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