HiI am trying to download the Reactome pathway dataset, using the following query, but get error
<!DOCTYPE Query><Query client="true" processor="TSV" limit="-1" header="1"><Dataset name="pathway" config="pathway_config"><Attribute name="species__displayname"/><Attribute name="stableidentifier_identifier"/><Attribute name="pathway_db_id"/><Attribute name="_displayname"/><Attribute name="referencedatabase_uniprot"/></Dataset></Query>
Tried from both central biomart : http://central.biomart.org/martwizard/#!/Interaction_and_pathways?mart=Reactome+(OICR%2C+Canada%3B+EBI%2C+UK%3B+NYU+Medical+Center%2C+USA)&datasets=pathway <http://central.biomart.org/martwizard/#%21/Interaction_and_pathways?mart=Reactome+%28OICR%2C+Canada%3B+EBI%2C+UK%3B+NYU+Medical+Center%2C+USA%29&datasets=pathway>
andhttp://banon.cshl.edu:5555/biomart/martservice?query=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%20%3C!DOCTYPE%20Query%3E%20%3CQuery%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%221%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%20%3CDataset%20name%20=%20%22pathway%22%20interface%20=%20%22default%22%20%3E%20%3CAttribute%20name%20=%20%22species__displayname%22%20/%3E%20%3CAttribute%20name%20=%20%22stableidentifier_identifier%22%20/%3E%20%3CAttribute%20name%20=%20%22pathway_db_id%22%20/%3E%20%3CAttribute%20name%20=%20%22_displayname%22%20/%3E%20%3CAttribute%20name%20=%20%22referencedatabase_uniprot%22%20/%3E%20%3C/Dataset%3E%20%3C/Query%3E <http://banon.cshl.edu:5555/biomart/martservice?query=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%20%3C%21DOCTYPE%20Query%3E%20%3CQuery%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%221%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%20%3CDataset%20name%20=%20%22pathway%22%20interface%20=%20%22default%22%20%3E%20%3CAttribute%20name%20=%20%22species__displayname%22%20/%3E%20%3CAttribute%20name%20=%20%22stableidentifier_identifier%22%20/%3E%20%3CAttribute%20name%20=%20%22pathway_db_id%22%20/%3E%20%3CAttribute%20name%20=%20%22_displayname%22%20/%3E%20%3CAttribute%20name%20=%20%22referencedatabase_uniprot%22%20/%3E%20%3C/Dataset%3E%20%3C/Query%3E>
I get the following error Query ERROR: caught BioMart::Exception::Database: Error during query execution: Table './test_reactome_mart/pathway__pathway__main' was created with a different version of MySQL and cannot be read Any pointers please. Thanks Prem
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