Hi John, we have now restored the phase information in the 08 BioPortal Please let us know if there are any more problems a
On Wed, Aug 29, 2012 at 9:40 PM, John Pan <[email protected]> wrote: > Hello,**** > > ** ** > > I was directed here by the Ensembl Helpdesk. **** > > ** ** > > I wanted to ask about a difference in exportable information found between > BioMart 0.8 portal and Biomart 0.7 portal**** > > ** ** > > Under the structure tab for exons it is possible to export Phase > information in version 0.7**** > > ** ** > > **** > > ** ** > > However, in Biomart 0.8 it is no longer possible.**** > > ** ** > > [image: Description: cid:[email protected]]**** > > ** ** > > Was this removed for a reason? A mis-configuration? Should I be wary of > using the phase information in 0.7? **** > > ** ** > > Additionally, if it’s possible I would suggest the feature of being able > to export start phase and end phase as seen in the Exon link in the Ensembl > Browser**** > > ** ** > > Example: **** > > > http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000139618;r=13:32889611-32973805;t=ENST00000380152 > **** > > ** ** > > While it is possible to calculate start and end phase using exon rank, > exon phase and exon phase of the next exon it is difficult to judge whether > a hypothetical alternative splicing event would have compatible exon phase > to maintain an in-correct frame transcript**** > > ** ** > > Thank you,**** > > ** ** > > John Pan | Bioinformatics group**** > > Genomic Health* *| 301 Penobscot Dr., Redwood City, CA 94063 **** > > Direct - ' 1-650-569-5614| * [email protected]**** > > ** ** > > [image: Description: Genomic Health]**** > > ** ** > > ** ** > > ______________________________________________________________________ > The contents of this electronic message, including any attachments, are > intended only for the use of the individual or entity to which they are > addressed and may contain confidential information. If you are not the > intended recipient, you are hereby notified that any use, dissemination, > distribution, or copying of this message or any attachment is strictly > prohibited. If you have received this transmission in error, please send an > e-mail to [email protected] and delete this message, along > with any attachments, from your computer. > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > >
_______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
