but i can't get where to configure base dir. in cocoon ?
Write a FOP configuration file (the URL I posted has hints). In the Cocoon conf, or whereever the pdfserializer is declared, tell the serializer to use it. See also http://cocoon.apache.org/2.1/userdocs/serializers/pdf-serializer.html in particular #Create+a+custom+configuration+file and #Sitemap+and+fo2pdf+serializer.
J.Pietschmann
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