I found there is a directory
/scratch/ettest52/simulations/static_tov. There are three directories and a
file inside static_tov. They are output-0000, output-0000-active, SIMFACTORY
and a file log.txt. Inside
output-0000 there is a directory SIMFACTORY. There is not any log files. Inside
SIMFACTORY there are three files properties.ini, simulation-1374132863.07 and
SubmitScript.
The log.txt file in /scratch/ettest52/simulations/static_tov
contains following details.
[LOG:2013-07-18 02:34:19] self.create(simulationName, parfile)::Creating
simulation static_tov [LOG:2013-07-18 02:34:19] self.create(simulationName,
parfile)::Simulation directory: /scratch/ettest52/simulations/static_tov
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::Simulation
Properties: [LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::[properties]
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::machine
= queenbee [LOG:2013-07-18 02:34:22] self.create(simulationName,
parfile)::simulationid =
simulation-static_tov-queenbee-qb3.loni.org-ettest52-2013.07.18-02.34.19-19349
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::sourcedir
= /home/ettest52/Cactus [LOG:2013-07-18 02:34:22] self.create(simulationName,
parfile)::configuration = sim [LOG:2013-07-18 02:34:22]
self.create(simulationName, parfile)::configid =
config-sim-qb4.loni.org-home-ettest52-Cactus [LOG:2013-07-18 02:34:22]
self.create(simulationName, parfile)::buildid =
build-sim-qb4.loni.org-ettest52-2013.07.18-07.25.24-12102 [LOG:2013-07-18
02:34:22] self.create(simulationName, parfile)::testsuite = False
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::executable
= /scratch/ettest52/simulations/static_tov/SIMFACTORY/exe/cactus_sim
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::optionlist
= /scratch/ettest52/simulations/static_tov/SIMFACTORY/cfg/OptionList
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::submitscript
= /scratch/ettest52/simulations/static_tov/SIMFACTORY/run/SubmitScript
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::runscript
= /scratch/ettest52/simulations/static_tov/SIMFACTORY/run/RunScript
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::parfile
= /scratch/ettest52/simulations/static_tov/SIMFACTORY/par/static_tov.par
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::
[LOG:2013-07-18 02:34:22] self.create(simulationName, parfile)::Simulation
static_tov created [LOG:2013-07-18 02:34:22] self.submit(submitScript)::Restart
for simulation static_tov created with restart id 0, long restart id 0000
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::Prepping for submission
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::No previous walltime
available to be used, using walltime 8:00:00 [LOG:2013-07-18 02:34:22]
self.submit(submitScript)::Defined substituion properties for submission
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::{'SIMULATION_ID':
'simulation-static_tov-queenbee-qb3.loni.org-ettest52-2013.07.18-02.34.19-19349',
'NODE_PROCS': 1, 'PPN_USED': 8, 'PPN': 8, 'ALLOCATION': 'NO_ALLOCATION',
'WALLTIME_HH': '08', 'CPUFREQ': '2.33', 'USER': 'ettest52', 'RUNDIR':
'/scratch/ettest52/simulations/static_tov/output-0000', 'NODES': 4,
'SIMULATION_NAME': 'static_tov', 'WALLTIME': '8:00:00', 'NUM_THREADS': 8,
'EXECUTABLE':
'/scratch/ettest52/simulations/static_tov/SIMFACTORY/exe/cactus_sim',
'PROCS_REQUESTED': 32, 'EMAIL': '[email protected]', 'RESTART_ID': 0,
'CHAINED_JOB_ID': '', 'FROM_RESTART_COMMAND': '', 'NUM_SMT': 1,
'WALLTIME_SECONDS': 28800, 'SIMFACTORY':
'/home/ettest52/Cactus/simfactory/bin/sim', 'PROCS': 32, 'SUBMITSCRIPT':
'/scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript',
'WALLTIME_HOURS': 8.0, 'WALLTIME_MM': '00', 'PARFILE':
'/scratch/ettest52/simulations/static_tov/output-0000/static_tov.par',
'WALLTIME_SS': '00', 'QUEUE': 'checkpt', 'CONFIGURATION': 'sim', 'SOURCEDIR':
'/home/ettest52/Cactus', 'HOSTNAME': 'qb3.loni.org', 'NUM_PROCS': 4,
'SCRIPTFILE':
'/scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript',
'MEMORY': '8192', 'WALLTIME_MINUTES': 480, 'SHORT_SIMULATION_NAME':
'static_tov-0000'} [LOG:2013-07-18 02:34:22]
self.submit(submitScript)::self.Properties:
/scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/properties.ini
[LOG:2013-07-18 02:34:22] self.submit(submitScript):: [LOG:2013-07-18 02:34:22]
self.submit(submitScript)::[properties] [LOG:2013-07-18 02:34:22]
self.submit(submitScript)::machine = queenbee [LOG:2013-07-18 02:34:22]
self.submit(submitScript)::simulationid =
simulation-static_tov-queenbee-qb3.loni.org-ettest52-2013.07.18-02.34.19-19349
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::sourcedir =
/home/ettest52/Cactus [LOG:2013-07-18 02:34:22]
self.submit(submitScript)::configuration = sim [LOG:2013-07-18 02:34:22]
self.submit(submitScript)::configid =
config-sim-qb4.loni.org-home-ettest52-Cactus [LOG:2013-07-18 02:34:22]
self.submit(submitScript)::buildid =
build-sim-qb4.loni.org-ettest52-2013.07.18-07.25.24-12102 [LOG:2013-07-18
02:34:22] self.submit(submitScript)::testsuite = False [LOG:2013-07-18
02:34:22] self.submit(submitScript)::executable =
/scratch/ettest52/simulations/static_tov/SIMFACTORY/exe/cactus_sim
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::optionlist =
/scratch/ettest52/simulations/static_tov/SIMFACTORY/cfg/OptionList
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::submitscript =
/scratch/ettest52/simulations/static_tov/SIMFACTORY/run/SubmitScript
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::runscript =
/scratch/ettest52/simulations/static_tov/SIMFACTORY/run/RunScript
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::parfile =
/scratch/ettest52/simulations/static_tov/SIMFACTORY/par/static_tov.par
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::chainedjobid = -1
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::ppn = 8
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::procsrequested = 32
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::allocation =
NO_ALLOCATION [LOG:2013-07-18 02:34:22] self.submit(submitScript)::user
= ettest52 [LOG:2013-07-18 02:34:22] self.submit(submitScript)::numsmt
= 1 [LOG:2013-07-18 02:34:22] self.submit(submitScript)::walltime =
8:00:00 [LOG:2013-07-18 02:34:22] self.submit(submitScript)::numprocs =
4 [LOG:2013-07-18 02:34:22] self.submit(submitScript)::nodeprocs = 1
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::numthreads = 8
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::hostname =
qb3.loni.org [LOG:2013-07-18 02:34:22] self.submit(submitScript)::ppnused
= 8 [LOG:2013-07-18 02:34:22] self.submit(submitScript)::queue =
checkpt [LOG:2013-07-18 02:34:22] self.submit(submitScript)::cpufreq =
2.33 [LOG:2013-07-18 02:34:22] self.submit(submitScript)::procs = 32
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::memory = 8192
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::nodes = 4
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::pbsSimulationName=
static_tov-0000 [LOG:2013-07-18 02:34:22] self.submit(submitScript)::
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::saving substituted
submitscript contents to:
/scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript
[LOG:2013-07-18 02:34:22] self.submit(submitScript)::Executing submission
command: qsub
/scratch/ettest52/simulations/static_tov/output-0000/SIMFACTORY/SubmitScript
[LOG:2013-07-18 02:34:22] self.makeActive()::Simulation static_tov with
restart-id 0 has been made active [LOG:2013-07-18 02:34:23] job_id =
self.extractJobId(output)::received raw output: Invalid allocation
"NO_ALLOCATION". [LOG:2013-07-18 02:34:23] job_id =
self.extractJobId(output)::===================== Allocation information for
ettest52 ===================== [LOG:2013-07-18 02:34:23] job_id =
self.extractJobId(output):: Proj. Name| Alloc| Balance| Deposited|
%Used| Days Left| End [LOG:2013-07-18 02:34:23] job_id =
self.extractJobId(output)::--------------------------------------------------------------------------------
[LOG:2013-07-18 02:34:23] job_id =
self.extractJobId(output)::loni_cactus08|loni_cactus08 on
@Dell_Cluster|106210.43| 250000.00| 57.52| 167|2014-01-01
[LOG:2013-07-18 02:34:23] job_id = self.extractJobId(output):: [LOG:2013-07-18
02:34:23] job_id = self.extractJobId(output)::Note: Balance and Deposit are
measured in CPU-hours [LOG:2013-07-18 02:34:23] job_id =
self.extractJobId(output)::qsub: submit filter returned an error code, aborting
job submission. [LOG:2013-07-18 02:34:23] job_id = self.extractJobId(output)::
[LOG:2013-07-18 02:34:23] job_id = self.extractJobId(output)::using
submitRegex: (\d+)[.]qb2 [LOG:2013-07-18 02:34:23]
self.submit(submitScript)::After searching raw output, it was determined that
the job_id is: -1 [LOG:2013-07-18 02:34:23] self.submit(submitScript)::The
regex did NOT match anything. No job_id means no control. [LOG:2013-07-18
02:35:29] ret = restart.load(sim, activeId)::For simulation static_tov, loaded
restart id 0, long restart id 0000
I do not understand what these means. What I have to do to complete simulation?
Udayaraj KhanalProfessorCentral Department of PhysicsTribhuvan
UniversityKirtipur, Nepal _______________________________________________
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