Hello Matia. Did you run this command to install the prerequisites? $(sudo -l sudo) su -c 'apt-get install -y subversion gcc git numactl libgsl-dev libpapi-dev python libhwloc-dev make libopenmpi-dev libhdf5-openmpi-dev libfftw3-dev libssl-dev liblapack-dev g++ curl gfortran patch pkg-config libhdf5-dev libjpeg-turbo?-dev'
Also, what do you see when you type `which mpicc`? Thanks. --Steve On 8/26/2019 3:00 AM, Mattia wrote: > After the compilation I get the following list of errors: > > CST error 1: > -> Missing thorn ExternalLibraries/BLAS > > > CST error 2: > -> Missing thorn ExternalLibraries/FFTW3 > > > CST error 3: > -> Missing thorn ExternalLibraries/GSL > > > CST error 4: > -> Missing thorn ExternalLibraries/HDF5 > > > CST error 5: > -> Missing thorn ExternalLibraries/hwloc > > > CST error 6: > -> Missing thorn ExternalLibraries/LAPACK > > > CST error 7: > -> Missing thorn ExternalLibraries/libjpeg > > > CST error 8: > -> Missing thorn ExternalLibraries/LORENE > > > CST error 9: > -> Missing thorn ExternalLibraries/MPI > > > CST error 10: > -> Missing thorn ExternalLibraries/OpenSSL > > > CST error 11: > -> Missing thorn ExternalLibraries/PAPI > > > CST error 12: > -> Missing thorn ExternalLibraries/pthreads > > > CST error 13: > -> Missing thorn ExternalLibraries/zlib > > > CST error 14: > -> Thorn 'CT_MultiLevel' requires the capability 'MPI'. > Please add a thorn that provides 'MPI' to your ThornList or remove > 'CT_MultiLevel' from it ! > > > CST error 15: > -> Thorn 'Carpet' requires the capability 'MPI'. > Please add a thorn that provides 'MPI' to your ThornList or remove > 'Carpet' from it ! > > > CST error 16: > -> Thorn 'CarpetIOHDF5' requires the capability 'HDF5'. > Please add a thorn that provides 'HDF5' to your ThornList or > remove 'CarpetIOHDF5' from it ! > > > CST error 17: > -> Thorn 'CarpetInterp' requires the capability 'MPI'. > Please add a thorn that provides 'MPI' to your ThornList or remove > 'CarpetInterp' from it ! > > > CST error 18: > -> Thorn 'CarpetLib' requires the capability 'MPI'. > Please add a thorn that provides 'MPI' to your ThornList or remove > 'CarpetLib' from it ! > > > CST error 19: > -> Thorn 'CarpetReduce' requires the capability 'MPI'. > Please add a thorn that provides 'MPI' to your ThornList or remove > 'CarpetReduce' from it ! > > > CST error 20: > -> Thorn 'EOS_Omni' requires the capability 'HDF5'. > Please add a thorn that provides 'HDF5' to your ThornList or > remove 'EOS_Omni' from it ! > > > CST error 21: > -> Thorn 'GiRaFFEfood' requires the capability 'GSL'. > Please add a thorn that provides 'GSL' to your ThornList or remove > 'GiRaFFEfood' from it ! > > > CST error 22: > -> Thorn 'Hydro_RNSID' requires the capability 'HDF5'. > Please add a thorn that provides 'HDF5' to your ThornList or > remove 'Hydro_RNSID' from it ! > > > CST error 23: > -> Thorn 'IOHDF5' requires the capability 'HDF5'. > Please add a thorn that provides 'HDF5' to your ThornList or > remove 'IOHDF5' from it ! > > > CST error 24: > -> Thorn 'IOHDF5Util' requires the capability 'HDF5'. > Please add a thorn that provides 'HDF5' to your ThornList or > remove 'IOHDF5Util' from it ! > > > CST error 25: > -> Thorn 'IOJpeg' requires the capability 'libjpeg'. > Please add a thorn that provides 'libjpeg' to your ThornList or > remove 'IOJpeg' from it ! > > > CST error 26: > -> Thorn 'Interpolate2' requires the capability 'LAPACK'. > Please add a thorn that provides 'LAPACK' to your ThornList or > remove 'Interpolate2' from it ! > > > CST error 27: > -> Thorn 'LlamaWaveToy' requires the capability 'LAPACK'. > Please add a thorn that provides 'LAPACK' to your ThornList or > remove 'LlamaWaveToy' from it ! > > > CST error 28: > -> Thorn 'Meudon_Bin_BH' requires the capability 'LORENE'. > Please add a thorn that provides 'LORENE' to your ThornList or > remove 'Meudon_Bin_BH' from it ! > > > CST error 29: > -> Thorn 'Meudon_Bin_NS' requires the capability 'LORENE'. > Please add a thorn that provides 'LORENE' to your ThornList or > remove 'Meudon_Bin_NS' from it ! > > > CST error 30: > -> Thorn 'Meudon_Mag_NS' requires the capability 'LORENE'. > Please add a thorn that provides 'LORENE' to your ThornList or > remove 'Meudon_Mag_NS' from it ! > > > CST error 31: > -> Thorn 'NullNews' requires the capability 'MPI'. > Please add a thorn that provides 'MPI' to your ThornList or remove > 'NullNews' from it ! > > > CST error 32: > -> Thorn 'QuasiLocalMeasures' requires the capability 'LAPACK'. > Please add a thorn that provides 'LAPACK' to your ThornList or > remove 'QuasiLocalMeasures' from it ! > > > CST error 33: > -> Thorn 'SphericalHarmonicDecomp' requires the capability 'HDF5'. > Please add a thorn that provides 'HDF5' to your ThornList or > remove 'SphericalHarmonicDecomp' from it ! > > > CST error 34: > -> Thorn 'SphericalHarmonicDecomp' requires the capability 'GSL'. > Please add a thorn that provides 'GSL' to your ThornList or remove > 'SphericalHarmonicDecomp' from it ! > > > CST error 35: > -> Thorn 'SphericalHarmonicRecon' requires the capability 'HDF5'. > Please add a thorn that provides 'HDF5' to your ThornList or > remove 'SphericalHarmonicRecon' from it ! > > > CST error 36: > -> Thorn 'SphericalHarmonicRecon' requires the capability 'FFTW3'. > Please add a thorn that provides 'FFTW3' to your ThornList or > remove 'SphericalHarmonicRecon' from it ! > > > CST error 37: > -> Thorn 'SphericalHarmonicRecon' requires the capability 'MPI'. > Please add a thorn that provides 'MPI' to your ThornList or remove > 'SphericalHarmonicRecon' from it ! > > > CST error 38: > -> Thorn 'SphericalHarmonicReconGen' requires the capability 'HDF5'. > Please add a thorn that provides 'HDF5' to your ThornList or > remove 'SphericalHarmonicReconGen' from it ! > > > CST error 39: > -> Thorn 'SystemTopology' requires the capability 'hwloc'. > Please add a thorn that provides 'hwloc' to your ThornList or > remove 'SystemTopology' from it ! > > > CST error 40: > -> Thorn 'SystemTopology' requires the capability 'MPI'. > Please add a thorn that provides 'MPI' to your ThornList or remove > 'SystemTopology' from it ! > > > CST error 41: > -> Thorn 'TGRtensor' requires the capability 'LAPACK'. > Please add a thorn that provides 'LAPACK' to your ThornList or > remove 'TGRtensor' from it ! > > > CST error 42: > -> Thorn 'TwoPunctures' requires the capability 'GSL'. > Please add a thorn that provides 'GSL' to your ThornList or remove > 'TwoPunctures' from it ! > > > CST error 43: > -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'. > Please add a thorn that provides 'GSL' to your ThornList or remove > 'TwoPunctures_KerrProca' from it ! > > _______________________________________________ > Users mailing list > [email protected] > http://lists.einsteintoolkit.org/mailman/listinfo/users _______________________________________________ Users mailing list [email protected] http://lists.einsteintoolkit.org/mailman/listinfo/users
