On 11/28/2011 03:00 PM, Prentice Bisbal wrote: > > On 11/23/2011 10:10 AM, Reuti wrote: >> Am 23.11.2011 um 16:01 schrieb Prentice Bisbal: >> >>> Schmidt, >>> >>> I've been having the same problem ever since I upgraded my cluster >>> nodes to RHEL 6. A few weeks ago. My SGE installation was not touched >>> during the upgrade, since it's on an NFS partition, and the head node >>> was not touched during the upgrade, either. The error seems harmless, >>> and I haven't tracked it down yet, but the existence of that error >>> message, harmless or not, is a problem, as users keep reporting it when >>> they see it. >> Interesting. Did the version of the bash change with the upgrade? >> >> -- Reuti >> > Sorry for the delayed response. Still behind on my mailing lists since > going to SC11. > > Yes, the version of bash changed with the upgrade. > > On a 5.7 system: > > $ bash --version > GNU bash, version 3.2.25(1)-release (x86_64-redhat-linux-gnu) > Copyright (C) 2005 Free Software Foundation, Inc. > > $ rpm -q bash > bash-3.2-32.el5 > > On a 6.1 system: > > $ bash --version > > GNU bash, version 4.1.2(1)-release (x86_64-unknown-linux-gnu) > Copyright (C) 2009 Free Software Foundation, Inc. > License GPLv3+: GNU GPL version 3 or later > <http://gnu.org/licenses/gpl.html> > > $ rpm -q bash > bash-4.1.2-8.el6.x86_64
Another piece of information: The modules RPM is not installed on any of my systems. I would expect that RH wouldn't include called to the module function in any scripts unless the modules RPM is already installed. > -- > Prentice > > >>> --- >>> Prentice >>> >>> >>> On 11/23/2011 09:07 AM, Schmidt U. wrote: >>>> Dear all, >>>> I know, the problem was discusses one or two years before, but I still >>>> have trouble to eliminate messages in.err file: >>>> I'm using SGE 6.2u5 and for every allocated node of an openmpi job the >>>> sge job's error file has two lines like this: >>>> //bin/bash: module: line 1: syntax error: unexpected end of file >>>> /bin/bash: error importing function definition for `module'/ >>>> I defined in global bashrc: >>>> /MODULEPATH=... >>>> MODULESHOME=... >>>> alias module='/usr/bin/modulecmd bash $*' >>>> module load default_module/ >>>> So far I do not need additional settings in the job script file >>>> concerning module environment, as well >>>> /#$ -V/ >>>> is used. >>>> The both lines/ /bin/bash:.../ in the err file have no effects, but >>>> even new users are sometimes rattled. >>>> Is anybody affected as well with this problem and found a solution to >>>> eliminate these messages ? >>>> >>>> Udo >>>> >>>> >>>> _______________________________________________ >>>> users mailing list >>>> [email protected] >>>> https://gridengine.org/mailman/listinfo/users >>> _______________________________________________ >>> users mailing list >>> [email protected] >>> https://gridengine.org/mailman/listinfo/users > _______________________________________________ > users mailing list > [email protected] > https://gridengine.org/mailman/listinfo/users > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
